Hippoglossus hippoglossus (Atlantic halibut): 117754467
Help
Entry
117754467 CDS
T07778
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010
MAPK signaling pathway
hhip04120
Ubiquitin mediated proteolysis
hhip04140
Autophagy - animal
hhip04144
Endocytosis
hhip04517
IgSF CAM signaling
hhip04620
Toll-like receptor signaling pathway
hhip04621
NOD-like receptor signaling pathway
hhip04622
RIG-I-like receptor signaling pathway
hhip05132
Salmonella infection
hhip05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117754467 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117754467 (traf6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117754467 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117754467 (traf6)
04140 Autophagy - animal
117754467 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117754467 (traf6)
04621 NOD-like receptor signaling pathway
117754467 (traf6)
04622 RIG-I-like receptor signaling pathway
117754467 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117754467 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
117754467 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117754467 (traf6)
04121 Ubiquitin system [BR:
hhip04121
]
117754467 (traf6)
Enzymes [BR:
hhip01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117754467 (traf6)
Membrane trafficking [BR:
hhip04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
117754467 (traf6)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117754467 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
TRAF6_Z2
U-box
zf-RING_5
RING_XB3-XBAT31
zf-RING_11
TRAF3_RING
zf-TRAF_2
BLI1
DM
zf-RING_6
DUF7310
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
117754467
NCBI-ProteinID:
XP_034429224
LinkDB
All DBs
Position
3:4683555..4690421
Genome browser
AA seq
579 aa
AA seq
DB search
MACYDVNKGSLEEDSFDGAVGGELSSCALAMLERERESLLSPSETSGTLILSNSASLQAD
VPLQGYDVEFDPPLESKYECPICLMALRNAVQTPCGHRFCKNCIEKSIRDTGQRCPVDNE
MLTEDQLFPDNFAKREILSLTVRCPNSGCDDEMELRHLENHLAQCQFATATCPQCQQFVR
KSHLEEHTTVECQRRPVSCPDCVACFVYEESELHEQQCPFANVNCQYCEMDLIRDQIESH
CDTDCPKAPITCNFSTFGCKERMQRHDLAQHMQEFTQMHMRYMAEFLRGLSLNGSTPKSL
WANGPSVSSEDQGAAASLSSSGGLRGAAGGSGGGGGGGAASCASAQPNEETQRLREMDGR
LVKQDHRLRELSILKETQAGQLAELRSRVSMLEDTVKELEAQQCRGIFIWRLKGFSAHMR
NQEAGLAVVEHSPGFYTGYPGYKLCLRLHLQTPNALRCSNYISLFVHTMQGAFDGELTWP
FQGTIRLAILDQGPEGQHHVEVMETKPDLQAFQKPTIQRNPKGFGYVTFMHLHQLKQRAY
VKDDTLLIRCDVTSRFDNMPNREGPAVQPRGPEASVSRD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctatgatgtcaacaaggggagtctggaggaggatagcttcgatggcgctgtt
ggtggagagctgtctagttgtgccttggcgatgctggaaagagagcgagaatcccttctc
agcccatcagagacgtctggcaccctcatcctcagcaactccgccagtcttcaggctgat
gtgcccctccagggctacgacgtggagtttgacccgcccctggagagtaaatatgagtgt
cccatctgcctcatggctcttaggaatgctgttcaaacaccctgcggtcaccgtttctgc
aagaactgcattgagaaatccattcgtgacacaggacagagatgccccgtggacaacgaa
atgctgacagaagatcagctgtttcctgataactttgccaaacgagagattctatcacta
acggttcgctgtccaaactccggttgtgatgatgaaatggagcttcgacatttggagaat
catttggcgcagtgtcagtttgcgactgcgacttgtccacagtgccagcagtttgtgaga
aagagccacttagaggagcacacaaccgttgagtgccaaaggagacctgtgtcgtgccct
gattgtgtggcatgcttcgtctatgaggagagcgagcttcacgagcagcagtgtcccttt
gctaacgtgaactgtcagtactgtgagatggatctcatcagggaccagattgaatctcat
tgtgacacagattgcccaaaggcacccatcacctgtaactttagcacctttggatgtaag
gaaaggatgcagcgccatgacctggctcagcacatgcaggagttcacgcagatgcacatg
cggtacatggctgagttcctgcgtggcctgagcctcaatggcagcacgcccaaatccctg
tgggcgaatggaccttctgtttcttccgaagatcaaggagctgcagcatcgctatcttcc
tctggtgggctcagaggagctgcaggcggcagcggtggtggcggtggcggtggcgccgcc
agctgtgcttcggctcagcctaatgaagagacgcagcggctcagagagatggacggacga
ttggtgaagcaggatcatcggctacgtgagctctccatcttaaaggaaacacaggcaggt
cagcttgcagagctccggagtagggtgtcaatgctggaggacacggtgaaggagctggag
gcccagcagtgccgcggtatcttcatctggcgcctcaaaggtttctctgcccacatgcgg
aaccaagaagctggtctcgcggtggtcgagcacagccctggcttctacacgggctaccca
ggctacaagctgtgcctgcgtttacacctgcagacgcccaacgccctgcgctgctccaac
tacatctccctctttgtccacaccatgcagggagcttttgacggggagctgacctggccg
ttccaaggcaccatccggctcgccatcctcgaccagggccctgagggtcagcaccacgtg
gaggtgatggaaaccaaaccagacctgcaggcctttcagaagcccaccatccagcgcaat
cccaaaggatttggctacgttaccttcatgcacctgcatcagctgaaacagagagcctat
gtcaaagatgacaccttacttatccgctgcgatgtgacgtcgcgttttgacaatatgcct
aatcgtgagggaccagcggtgcagcctcgagggcccgaggcatcggtttcaagggactaa
DBGET
integrated database retrieval system
