Hippoglossus hippoglossus (Atlantic halibut): 117758338
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Entry
117758338 CDS
T07778
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04115
p53 signaling pathway
hhip04145
Phagosome
hhip04148
Efferocytosis
hhip04350
TGF-beta signaling pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117758338 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117758338 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117758338 (thbs1b)
04148 Efferocytosis
117758338 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
117758338 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117758338 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117758338 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117758338 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117758338 (thbs1b)
Membrane trafficking [BR:
hhip04131
]
Endocytosis
Phagocytosis
Opsonins
117758338 (thbs1b)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117758338 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
Laminin_G_3
TSP1_ADAMTS
EGF
cEGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
117758338
NCBI-ProteinID:
XP_034435827
LinkDB
All DBs
Position
24:4257558..4269042
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMVWSCEAARVAESRDDNSVHDLFDLIQVPKKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLLVQEDRAVLYAGCEEVNTAELDA
PIQSILTQDTPLTAQLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSLTSDTM
TLENMNGSSAIRTEYTGHKTKDLQMVCGFSCDDLVSMFKELKSLGVVVKELSNELRQLTD
ENKLIKTRIDIHSGVCIHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCGNAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGGWSHWSPWSSCSVTCGSGVITHIRLCNSPNPQLGGKDCVGEGRQT
EKCQMAPCPINGNWGPWSPWDTCSLTCGGGVQNRKRLCNDPEPKYDGKECLGEAKGNQIC
NKKSCPVDGCLSNPCFAGAKCTSLTDGSWKCGKCPGGYSGNGIKCKDVDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPPRYTGPQPFGRSVEHAVAHKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDSDDDNDGIPDDRDNCPFIFNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPRVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDTDGDGRGDACKDDFDQDNVPDIYDVCPENFGISETDFRQFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGLAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTTGQVRTLWHDPKHVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADTGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYNCRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcacagggatatttttgttgttgatggtttggagctgcgaggctgcgagagtc
gcagagagcagagacgacaatagcgtgcacgacttgttcgatctcattcaagtccccaag
aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctcatcgactcc
atccacgccgagagaggattcctcctgctgctcaacttcaagcagttcaagcggacccgg
gggagcctcctcaccgtggagaagcaggacggctccggacccgtgttcgagatcgtctcc
aacggcaaagcgaacaccttggacatagttttctccaccgagaacaagcagcaggtggtg
tccatcgaggacgtggatctggccacgggtcactggaagaacatcaccctgttagtgcag
gaggaccgggcggtgctgtacgcgggatgcgaggaggtgaacaccgcggagctggatgcc
cccatccagagcatcctgacgcaggacactccgctcaccgcgcagctccggattgggaag
ggagcggtgaaggacaggttcatgggggtcctacaaaatgtgcgcttcgtgtttggaaca
actctcgatgccatcctccgcaacaaaggatgccagaactcattgacatccgacaccatg
accctggagaacatgaatggttcctcagccataagaacagagtacactggacataagacc
aaagacctgcagatggtctgtggcttctcctgtgacgacttggtcagcatgttcaaggag
ctgaagagtcttggtgtggtggtgaaggagctgtccaatgagctccgacagctgacggat
gaaaacaagctgattaaaacccgcatcgacattcacagcggcgtctgcatccacaacggc
atcgtgcacaagaacaaagacgagtggaccgtcgacgactgcaccgagtgcacttgtcag
aactctgcgactgtttgccgcaagatctcgtgccccctgatcccctgcggcaacgctact
gttcctgatggagagtgctgcccccgctgtggaacaccgagtgactatgcagaggacggc
tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtgggcgctcctgcgaccgtatcaataacaactgtgagggcacctcagtgcagacccgc
gactgctacctccaggagtgtgacaaacgcttcaagcaggacggcggctggagccactgg
tcaccctggtcttcctgctccgtcacctgtggttctggtgtcatcacccacatccgcctc
tgcaactcccccaaccctcagcttggaggcaaggactgcgtgggagagggccgacaaaca
gagaaatgtcagatggctccgtgccccatcaatggcaactgggggccgtggtcaccgtgg
gacacatgcagtcttacctgtggaggtggtgtccagaatcgtaaacgcctgtgcaatgac
cctgaaccaaaatacgatggcaaagagtgtcttggtgaagccaaaggcaaccagatatgc
aacaagaaatcctgccccgtcgatgggtgtctgtccaacccctgctttgctggagcaaaa
tgcaccagtttaactgatggttcctggaaatgtggcaagtgtccaggtggttacagcggc
aacggtatcaagtgcaaagatgtcgacgagtgcaaagaggtgccagacgcttgctttgag
ttcaatggcgtccatcgctgtgagaatacagaaccaggctacaactgcctgccctgtccc
cctcgctacacaggaccccagccctttggcagaagtgtggagcacgctgtggctcacaaa
caggtgtgcacaccccgtaatccctgcctcgatggaagccacgactgcaacaaaaacgcc
cgctgcaactacctcggacacttcgccgatcccatgtaccgctgcgagtgccggcccggt
tacgctggcaacggccatatctgtggagaggacacggatctcgatggatggcccaacgct
gacttggtttgtgtggagaatgccacctaccactgcaaaaaggacaactgccccaacctc
cccaactctgggcaggaagattacgataaggacggcattggagatgcttgtgacagtgat
gatgacaatgatggcattcctgacgatagggacaactgtccattcatcttcaaccccagg
cagtatgattatgaccgtgatgacgtgggtgaccgctgtgacaactgcccatacaacagt
aatccagaccagacagacacagacaacaatggagagggagatgcctgcgctgtggacatc
gacggagatggtatattaaatgagaaggataactgtccccgtgtgtacaacgtggaccaa
agagacacagatctggacggagttggagacatgtgcgataactgccctctggaacataat
cctgatcaggtggattcagatgacgaccgcgtgggagacaagtgtgacagcaaccaggac
attgatgaggacggacatcagaacaatctggacaactgcccgtacatccccaatgccaat
caggctgaccacgacaaggacggcaagggagacgcctgtgaccatgatgacgacaatgat
ggcatccctgacgataaggacaactgcagactggccttcaaccctgaccagctggacact
gatggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaacgtgccggac
atctatgacgtgtgtcccgaaaactttggcatcagtgagacagacttccgccagttccag
atggttcctctggaccccaaaggcacctcccagattgatcctaattgggtcgtacgccat
cagggcaaagagctcgtccagactgtcaactgtgaccctggccttgctgttgggtaccac
gagtttaatgcagtggacttcagtgggactttcttcatcaacacagagagggatgatgat
tatgccggctttgtgtttggctaccagtccagttccaggttctacgtggtgatgtggaag
cagattacgcagacctactggtcaaataaacccaccaaggcccaggggtattctggcctt
tccattaaagtggtaaattccaccactggtcctggagagcacctcagaaatgccctctgg
cacaccgggaataccacgggacaggtccgcactctctggcatgacccaaagcatgttgga
tggaaagacttcactgcctacagatggcatctgatccacagaccgagaacaggacatatt
agagttgtgatgtacgagggcaaaaagatcatggcagataccggcagcatctatgacaag
acatacgcaggtggcaggctaggtctttttgtcttctcacaagagatggtatacttttca
gacctcaagtataattgcagagacgcataa
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