Hippoglossus hippoglossus (Atlantic halibut): 117764884
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Entry
117764884 CDS
T07778
Symbol
tardbpl
Name
(RefSeq) TAR DNA binding protein, like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117764884 (tardbpl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117764884 (tardbpl)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117764884 (tardbpl)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
117764884
NCBI-ProteinID:
XP_034446903
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Position
7:13118061..13123611
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AA seq
405 aa
AA seq
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MSELYIRVAEEENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPENDWGSLVYVVNYPKDNKRKMDEIDAASAVKVKRGFQKTSDLIVLGLPWKTSEQD
LKDYFTTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYETQTKVIAQRHMIDGRWCDCKLPN
SRNFPFDCPSQASPDEPMRSRKIFVGRCTEDMSTDDLRQYFMQYGEVTDVFIPKPFRAFA
FVTFADDQVAQALCGEDLIIKGISVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYGSNRG
GLGSGSSGVNFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTTAGTATTTRDQTYS
SASTSYSSPSSASLGWAAGTNTASNSGFSSGFGTSMESKSSSWGM
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagctgtacatccgtgtggcggaggaggagaacgaggagccgatggagatcccc
tcggaggacgacgggaccgtattgctgtcgtcggtggcggctcagtttccaggggcgtgc
gggctgcgctacaggaacccggagtcccagtgcatgaggggggtccggctcgtggagggg
gtcctgcatgcacctgagaacgactgggggagtctggtctacgtcgtcaattatcccaaa
gataacaaaaggaagatggatgaaatagatgctgcctcagctgtgaaagtcaagaggggc
tttcagaagacatcagatctcattgtcctcggactaccgtggaaaacatcagaacaagac
ttgaaagactatttcactactttcggggaggtcatcatggtgcaggtcaagagagatgca
aaaactggcaactcaaaaggatttggatttgtccgattcactgaatacgagacacaaacc
aaagtcattgctcagagacatatgattgatggaaggtggtgtgattgcaaacttcctaac
tcaaggaattttccttttgactgtccctctcaggcaagtcctgatgagccgatgcgaagc
cgtaaaatctttgttggccgctgcacagaggacatgtcaactgatgacctgaggcagtac
ttcatgcagtacggtgaagtcactgatgtcttcatccccaaacctttccgggcttttgca
ttcgtcacatttgctgacgaccaggtcgcccaagccctgtgtggcgaggacttgatcatc
aagggcatcagcgtgcacatctctaatgctgagcccaaacacaacaacagtaggcaaatg
atggatcgtgggcggtttggggctggtgggttcagtcagggctatggcagtaatcgtggt
gggctaggcagcggtagcagtggggttaactttggggctctcggtcttaaccctgcaatg
gtggccgctgctcaggcagctctacagagcagttggggaatgatgggcatgctggctaac
cagcagggtctgaccacaacggcaggcacagccactacaacccgagaccagacctatagc
tctgccagcaccagttacagcagccccagctcggctagcctcggctgggctgcaggaact
aacaccgcctccaacagcggcttcagctctggctttggcacgtctatggagtctaagtct
tctagttggggaatgtag
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