Hippoglossus hippoglossus (Atlantic halibut): 117766121
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Entry
117766121 CDS
T07778
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117766121 (scn4ab)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117766121 (scn4ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
117766121
NCBI-ProteinID:
XP_034448725
LinkDB
All DBs
Position
8:complement(23492391..23523101)
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AA seq
1788 aa
AA seq
DB search
MAPMLPPLGVEVFRRFTPASLEEIQQRHEAEEKEDQRRKEKNIEVAEEDLPKPASDLEAG
KPLPFIYGDPPPGLLNSPLEELDPFYQSHKTFIVLSRGNIIYRFNAEPACFLLSPFSRLR
TFAIRILIHSLFSLFIMMTIMTNCVFMTMSDPPSWSKTVEYVFTFIYTFEATIKVLSRGF
CVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLKQKCVLIPPLLRNNSSDVDPKTFYH
GNITLSNQTCGNDTGTSNFDFYEYINNPENHYFLPGNMDPLLCGNSSDAGVCPEGFMCLK
TGRNPNYGYTSYDSFGWAFLALFRLMTQDFWENLFQLVSKQRRLERCHHWLQLSPVALSH
LSLSLQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNKATLSEAKHKEEDY
AEILDALKKRDEEAACMAVLSESHNPNATQSHDQDHTVIEDFEDDQRPCPVCWYAFADVF
LKWNCCDCWRWLKQRLNTIVMDPFVDLGITMCIVFNTVFMALEHYPMTEEFEELLSIGNL
VFTGIFTAEMVFKLLAMDPYYYFQVGWNIFDSIIVTMSLVELGLADVQGLSVLRSFRLMR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCRIAE
DCKLPRWHMNDFFHAFLIIFRVLCGEWIETMWDCMEVSGQAMCLIVFMMVMVIGNLVVLN
LFLAMLLSSFSGDNLAAPEDEGENNLQIAINRINRAVSWTRSGIVEHIWTLMGKKNHEQE
HIGVDGEDDNKISKDILPLTFVTSDQQLSEINSLSCSHDNVKSSYNNITFLRVPIAKAES
ESESETPENEDEEGEEEENHSECDESSFCSTVQTLPDIKEDEDDEDHESNTPEDCCTNKC
YHRCPFLDIDPSKGRGRVWSNFRRTCFSIVEHNYFETFIIFMILLSSGALAFEDIYLEQR
RVIKMVLEYADQVFTYVFVIEMLLKWIAYGFKTYFTNAWCWLDFVIVDVSLVSLTANILG
YSDLGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMG
VNLFAGKFYYCFNATSAERFHPDDVNNKTECLALINANFNDARWKNLKVNYDNVGMGYLS
LLQVATFKGWMEIMYAAVDSRDVESQPMYEDNLYMYLYFVCFIIFGSFFTLNLFIGVIID
NFNQQKAKMGGTDLFMTEEQKKYYNAMKKLGSKKPQKPVPRPKNKFQGLVFDLVTTQFFD
ILIMVLICLNMVTMMVETDEQSAEKEMILYWVNLVFIIIFTTECSLKIIALRQHYFAVGW
NIFDFVVVILSVVGLLLADIIEKYFVSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALM
MSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKEAMIDDMFNFENFGNSMICLFMITTSA
GWDGLLSPIMNTPPDCDPDLENPGSMVRGNCGSPAVGIVFFTTYIIMSFLVVVNMYIAII
LENFNVATEESSELLCEDDFEMFYETWEKFDPNASQFIQYSQLSDFCDILQDPLRIPKPN
TIKLIHMDLPLVPGDKIHCLDVLLALTAQVLGDSGAMDSLKANMEEKFMANNPSKVSYEP
ISSTLRRKHEEVAAMVIQRAYRKHLLRRTVKVASYKYRKKTRGHQDEDLSLETKGLVFKR
ISQLYGDNQDSAESFAQVELQSEFLLHAAPPVTAPNLLQDENLRESIV
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atggcacctatgctgccccctcttggcgtggaggtctttagacgctttacacctgcttca
ctagaggaaatccaacagcgacatgaagctgaagagaaagaggatcagagaaggaaggaa
aagaacatcgaggtagcagaggaagatcttcctaaaccagcaagtgaccttgaggctggg
aagcccctaccattcatctatggagaccccccccctgggctcctcaacagcccattggag
gagctggatcccttctatcaatcacacaagacgttcatcgtgctcagtagaggaaacatc
atttacaggtttaatgctgaacccgcctgtttcctgcttagtccattcagtcgtttgaga
accttcgccatcaggatactcatccattctttattcagcttattcatcatgatgacgatt
atgacaaactgtgttttcatgacgatgagtgatccgccatcttggagcaagactgtggaa
tacgtgtttacgttcatctacacgtttgaagcaacaatcaaagttttgtcacggggattc
tgtgtcggagacttcaccttcctcagagacccctggaactggctggacttcatggtcatc
agcatggcatatctgacagagttcgtagatttgggaaacgtttctgcgttgcgaaccttc
agagttcttcgagcactgaagaccatcacagtcatccctggtctgaagacgattgtcgga
gctctcatccaatcagtgaagaagcttgctgatgtcatgatcctgacggtgttctgcctc
agtgtcttcgctctgatcggtctgcagcttttcatgggaaacctgaaacagaagtgtgtc
ctgatacctccgttgcttaggaacaactcttctgatgttgatcctaaaaccttttaccat
ggcaacatcaccctcagcaaccaaacctgtggcaatgacacaggaaccagcaactttgat
ttctatgagtatatcaacaacccagaaaatcattacttccttcctggaaacatggatcct
ctgctctgtggaaacagttctgatgcaggggtctgtccagagggtttcatgtgtctgaaa
acgggtagaaatccaaactacggttacaccagctatgactcgtttggttgggcatttctg
gctctgttcagactcatgacccaggacttctgggaaaatctcttccagctcgtaagtaag
cagcgcagattagagagatgtcatcactggttacaactctcacccgttgctctctctcac
ctgtctctctctcttcagacattgagagcagcaggtaaaacctacatgatcttctttgtg
gtcgtcatcttcctgggctcgttttacctcattaacctgatcctggcggtggttgcaatg
gcgtacgctgagcagaataaggccacactttctgaggcaaaacataaagaggaggactac
gctgagatcctggacgcgctgaagaagagagacgaggaggcagcctgcatggcggtgctt
tcagaatcacacaacccaaatgcaacgcagagtcatgatcaagaccacactgtcatagaa
gactttgaggatgaccagaggccgtgtcccgtgtgttggtatgccttcgctgacgtcttc
ttgaagtggaactgctgcgactgctggaggtggctgaaacagcggctcaacaccatcgtc
atggacccgtttgttgacctcggcatcaccatgtgcatcgttttcaacaccgtctttatg
gccttggagcattatccaatgacggaggagtttgaggagctgctgagcatcgggaacctg
gttttcacagggatcttcacagctgagatggtcttcaaacttctggccatggacccgtat
tactactttcaggtgggctggaacatctttgacagcatcattgtcaccatgagtctggtg
gagctgggactggctgatgttcagggcctgtctgtgctgcgctcattccgattgatgcga
gtctttaagttggccaagtcgtggccaaccctcaacatgctgatcaagatcatcgggaac
tctgtgggggctctggggaacctgactctggttctagcgatcattgtcttcatctttgcc
gtcgtcggtatgcagctgtttgggaagaactacaaagattgtgtctgtcgcatcgcagag
gactgtaaacttcctcgttggcacatgaacgactttttccacgccttcctcatcatcttt
agagtcctgtgtggagagtggatcgagaccatgtgggactgcatggaggtctcaggtcag
gccatgtgtctgattgtcttcatgatggtcatggtcatcggaaacctagtggtcctgaat
ctgtttctggccatgctgcttagctcgttcagtggagataatctggcagctccagaagat
gaaggagaaaacaatttgcagattgccataaatcggatcaacagggctgtgtcctggaca
aggtctggtatcgtggagcatatctggactctgatggggaagaagaaccatgaacaagaa
cacatcggagttgacggtgaagatgataacaagatctcaaaggacattttacctttgacc
tttgtgacttcagaccaacaactgtcagagataaacagcctcagctgtagtcatgacaat
gtgaaaagtagctacaacaacatcaccttcctgagggtgcccattgccaaggcagagtcc
gaatcagaatctgaaacacctgaaaatgaagatgaggagggtgaagaggaagaaaaccat
tcagaatgtgacgagtcgtcattctgcagcacagtacagacacttcctgatatcaaagag
gatgaagatgatgaagatcatgagtcaaacacacctgaggactgttgtaccaacaagtgc
tatcatagatgtccgttcctggacatagacccttccaagggcagagggagggtctggtct
aacttcaggagaacatgtttctccatcgtagaacacaactactttgagactttcatcatc
ttcatgattctgctgagcagtggagcactggcattcgaggacatttacttggagcagcgt
cgggtgataaagatggttctggaatatgcagaccaggtgttcacctacgtgtttgtaatc
gaaatgcttctcaagtggatcgcatatggattcaagacctactttaccaacgcatggtgc
tggctggacttcgtaatcgtagatgtatctctggtatcactgacagcaaacatcctggga
tactcagacctgggagccattaagtctctaaggactcttagagctctgaggcccttgagg
gccctgtcccgctttgaggggatgagggtggtggtgaatgctctggtcggagcgatcccg
tcgatctttaatgttcttctcgtctgtttgatcttctggttgatcttcagcatcatggga
gtaaatctgtttgcaggaaagttttattactgtttcaacgcaacatcagcggagaggttt
catcctgatgacgtcaataacaagactgagtgtctcgcactgatcaacgcaaacttcaat
gacgctcgctggaagaacttaaaggtcaactacgacaatgtgggaatgggctacctgtcg
ctgctgcaagtggccacatttaaaggttggatggagatcatgtacgcagcagtggactcc
agagacgtggagtcacagccgatgtatgaggacaacctgtacatgtacctgtactttgtc
tgtttcatcatctttggctccttcttcactctcaacctcttcattggagtcatcattgac
aatttcaaccagcagaaagcaaagatgggaggaacagatcttttcatgacggaagagcag
aagaaatattataatgccatgaagaaactgggctccaagaaacctcagaaacctgtacca
cgcccaaagaacaagttccagggtttggtctttgaccttgtgacaacacagtttttcgac
atcctcatcatggtgctgatctgcctcaacatggtgaccatgatggtggagacggatgaa
cagagcgcagagaaagagatgatcctgtattgggtcaacctcgtcttcatcatcatcttc
acgacagagtgctctctgaagatcatcgcgctcaggcagcactacttcgctgtgggctgg
aatatctttgactttgtggtcgtcatcctgtccgtcgtaggtctcctcctcgctgacatc
atagagaagtactttgtctcgccaacgctctttcgtgtcatccgattggctcgtatcggt
cgaattcttcgtctaattcgtggagcgaagggaatcaggaccctgctcttcgccctgatg
atgtcacttcctgccctcttcaacatcggcctcctcctcttcctcatcatgttcatcttc
tccatctttgggatgtcaaactttgcatacgtgaagaaggaggccatgatagatgacatg
tttaactttgagaactttgggaacagtatgatctgtttgtttatgatcaccacgtcagct
ggatgggatggtctgctgagtcccatcatgaacacaccaccggactgcgacccagaccta
gagaacccaggatccatggtccgagggaactgcggcagcccagcggtgggtattgtcttc
ttcaccacatatatcatcatgtccttcctcgtggtggtcaacatgtatatcgcaatcatc
ctggagaacttcaacgtggccacagaggagagcagcgagctgctgtgtgaggacgacttc
gagatgttttatgaaacctgggagaagtttgatcccaacgcgtcacagtttattcagtac
agtcagctatcggacttctgcgacattctgcaggatcctctgaggattcccaaaccaaac
accatcaaactgatccacatggatcttcctctggttcctggagataagattcactgtctg
gatgtcctgctcgcactcactgcacaggtgttgggtgattcaggagcaatggattctctc
aaagcaaacatggaggagaaattcatggccaacaacccatccaaggtgtcatatgaacca
atcagcagcaccctgaggaggaagcatgaagaggtggcagcgatggtaatccagagagcg
tacaggaaacacctcctgcggcggacagtcaaagtggcatcctacaaatatcgcaagaag
acgagggggcatcaagatgaggatttgtctctggagacaaaaggacttgtgtttaaacgt
atcagtcagctgtacggagacaaccaggactctgctgagtcattcgctcaggtggagctt
cagagtgagtttctccttcatgctgctcctccagtcactgccccgaacctactgcaagat
gagaacctgagagagtcaatcgtgtga
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integrated database retrieval system
