Hippoglossus hippoglossus (Atlantic halibut): 117768461
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Entry
117768461 CDS
T07778
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117768461 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117768461 (kdm2ba)
04121 Ubiquitin system [BR:
hhip04121
]
117768461 (kdm2ba)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117768461 (kdm2ba)
Enzymes [BR:
hhip01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117768461 (kdm2ba)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117768461 (kdm2ba)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117768461 (kdm2ba)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117768461 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117768461 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
117768461
NCBI-ProteinID:
XP_034452708
LinkDB
All DBs
Position
9:complement(19456816..19466899)
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDVSSGAKRRTDREETPRYRPEESLHRQPPLLSPSSLPRP
RPEDKLRKKRKLFDDDDEDDLSVRKKEKSDDPYFSKLLHHIKTEEEDEDAYEEEDEEGRD
PQFRIGVERKRRLGEAEEEGADRDSKNELLNPCIKTPVGDSDQSHSSSPQAGPSSEGGSE
TQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPK
RLFRNGNELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDSKMHIIQREIWMKIFRYLTHQELCVCMRVCKTWNRWC
CDKRLWTKIDLNRCTSITPLMLSGVIRRQPVYLDLSWTNISKKQLSWLINRLPGLRVLKL
SGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
TLRLAGLDITDTSLRLVSRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKMACERFMAEMSVSVPFRLKEEKLLQKTS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgatgaggaatatgattcagagtccgagcagcagcgg
gcagccaaccggccaaagcccaagatggggacgacgtcagccgttaagctgccgtccaac
cgcagctcgtccggcgccagacgcaggaggacgcgctgccgaaagtgcgaggcatgtctg
cggaccgagtgtggagagtgtcacttctgcaaagacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcattatgagacaatgcattgcgcccgtcctgcctcacacggcg
gtgtgtgtagtgtgtaaagaggccggcaaggaggacacactggaggaagaggaggacaag
ttcaactttatgttgatggagtgctccatctgcaacgagatcgtccaccctaactgcctc
aaggtgagcgacgcgtcgggggtggtgaacgatgaactccccaactgctgggaatgtccc
aaatgcaaccacgctgggaaaagtggaaaagtattgaagcaaaaaaggggcccaggcttc
aagtacgcctccaacctccccggctctctgctgagggaacagaagcctgtgaaggaggag
ggagacgtgtcctctggagccaagaggagaacagacagagaggagacgcccaggtacaga
cccgaggagtctctacaccgacagccgccactactctctcccagcagcctgcccaggccc
aggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgatgatgaggacgat
ctcagtgtgaggaaaaaggaaaagtcagatgacccttatttttccaaacttctgcaccat
atcaaaacagaagaggaggacgaagacgcatatgaggaagaagacgaagaaggaagggac
cctcaattccggattggtgtagagaggaaacggcgattaggagaagctgaagaagaaggg
gctgacagggactcaaagaatgaacttttgaatccctgcattaaaacgcctgttggagac
agtgaccagtctcacagcagctctccgcaggcaggccccagcagtgagggtggaagtgag
acccaggaaaaaggtccgcgtcctaaagctcgccgcaagcggcgtttgcctaacagggag
ctgagccgagaactgagcaaagcactgaatcaggaaatccagaagacggaggactgcctg
gcgaacgagaaccgccaacccctgaaggtggagccagagacggaaaacgaggagcccaag
aggttgttccgcaacggtaatgaacttggggatcagaggccacacctcaagaccaaagag
atgaacgggaccccgtgggagctgcggcacttctacccgagtcagatcactccactaggt
ttcaaccggagcacgccgaccaaccgcccggtgccgccacgctccccacccaagtgtgtc
caaatggagcggcacgtcattcgcccccctccgatcagtccgcctcccgacagactgcct
cttaaagacagtaaaatgcacatcatacagcgtgagatctggatgaagatctttcgctac
ctcacacaccaggagctgtgtgtctgcatgagagtctgcaagacatggaacagatggtgt
tgtgataagagactgtggacaaagatcgatctgaaccgctgcacctccatcactccactc
atgctgagtggggttatccgccgacagccagtttacctggacctcagctggacaaatatt
tccaagaaacaattaagctggctgatcaatcgattgccaggtctgcgagtgttaaagttg
tctgggtgctcttgggctgctgtgtctgcgctctgcacctccagctgccctctgctgcgc
accctggatgtccagtgggtggagggacttaaagatgcacagatgagggacctcctctca
ccccccacagacaacagaccaggtcaactggataaccgctgcaagttgcggaatgttgag
accctgcggctggcggggctggacatcacagacacatctttacgtctcgtcagtcggcag
atgcctttgctgtccaggctggacctgagttactgcaaccacatcaacgaccagtcagtc
aacctactgacagcagcagggaccacgaccagagactctctaacagaaatcaacctgtct
gtttgtaaccgcgtcacagaccattcccttaactttttcaagcggtgtggaagcatctgt
cagatagaccttcgcttttgcaagcaggtgaccaagatggcctgcgaaaggttcatggca
gagatgtctgtgagcgtgccgttcagactgaaagaggagaaactgctgcagaagacaagc
tag
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