Hippoglossus hippoglossus (Atlantic halibut): 117769016
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Entry
117769016 CDS
T07778
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117769016 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117769016 (kdm2ab)
04121 Ubiquitin system [BR:
hhip04121
]
117769016 (kdm2ab)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117769016 (kdm2ab)
Enzymes [BR:
hhip01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117769016 (kdm2ab)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117769016 (kdm2ab)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117769016 (kdm2ab)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117769016 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117769016 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
LRR_FBXL15
Cupin_8
SR-25
LRR_SKP2
LRR_6
Cupin_1
C1_1
LRR_8
Motif
Other DBs
NCBI-GeneID:
117769016
NCBI-ProteinID:
XP_034453454
LinkDB
All DBs
Position
10:complement(14551265..14564972)
Genome browser
AA seq
1304 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCDRFRSDLVKHMEGKDF
TFEYIQREGLREPIIFKTADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIQLNQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGKG
LTRADVEANDHPGNGNSNGVDSDTENAEIKLKQPKKEEEEEDTEEDGAAQLTTPQHLMTP
FELEGLCNLLGKLEELPVHKKCVPAGIQDAAALLEDMRAVLKEHSNDNPKLSYTGEPIVK
WPKRPSWYEPSTPPPPVIYRPRLAPSLHKPLGQRPTKRSSISALRRRRVRCKRCAGCCRK
ECGNCQYCHDMRKFGGPGRMKKGCITRQCLTPALPNTARCAICREGELDESDPSTFSLME
CSVCSQIAHRQCIKEPGEGKINDDLPSCWECPKCCQGKSSGSESSSDEDSGESESSSSLP
PSKLAYREGIGVSDGVRRGVCTGPQSRPTAPPPSQKLLLQHQQNRKRASALELRLKKKIK
LERSKLLVKQSALDRSPRLLSSRLLSRLRSPTSRLSQGRGLYHGSPGRTQSFLQQQSSRS
LVLESKGEPRRGRGRGVRLRGGGAGRGSGGGRGHGDLEEESDDSSSSSSSSSTSSSSSSS
SDEEEEREQNSGKGGDKENQPQSRRGQAAKEEEEAIEVANQNGAEDEDEEEIEQNSQTGD
KDGSYLKVTLQRPTKTKRDPSAIVPKLEAIAPQAATSTLPNQTRPLARPPIRIRGACPDQ
YSNRHTPPHTRSGHTDSRTSHSERLEVSKRQRPNRPAKLSNGASCSSSSELTHLRIPLSA
LQEGGSETDRESGLGGPGCEREVWVSVFRYLNRADLCICMAVSKNWYKWCLDKRLWARID
LSIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPALKDLMVAGCSWSSISA
LCSSGCPLLRSLDLRYADGVKDSQIRDLVSPPGCDNRSQLRTMQCLRLAGLDITDSTLRL
VIRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLIELNLGGCSKLTDTCLKYLRRL
SCISLLDLRGCKGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcatacacggtacagcaaacgcctgcgtacaggcacacggcgccgctac
caggacgatggaatctcagatgatgaaattgaagggaaacgaatgtttgacctggatgaa
aagttgcagtgcgacaggtttcgctcagatttggtcaaacacatggaaggcaaagatttc
acatttgaatacatccagagggaagggctcagggaaccaatcatctttaagacagctgat
ggtcttggaatacaaatgccagaccctgacttcagtgtgagtgatgtcaagttgtttgta
ggtagtcgacgaatcgttgatgtgatggacgtgaacacccagaagggaatcgagatgtca
atggctcagtggcgacgctactatgagacgccaccatcagaaagagaaaaactctacaat
gtcatcagcctggagttcagccacaccaggctggagaatctagtcaaacgaccagcttcg
gtggaccttattgactgggtggacaacatgtggccgcgtcatctcaaggagcgacaaaga
gactccacaaatgccatcatagacatgcactatcccaaagtacagaagtattgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttcagtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccacagaacctggag
atgtatgagaactgggttttatcaggaaaacagggagacatcttcttgggggacaagtgt
catgactgtcagaggatacaactcaaccagggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacacgccagaggacacgttggtgtttgggggaaatttcctccatagc
tttaacatcccgatgcagctcaacatctacagcattgaggatcgcacacgggtgccagcg
aagttccgttaccctttctactatgagatgtgctggtatgtcctggagagatacctctac
tgtctgacaaacatctcacacctcacacctgagttccagaaatactcccttggcaaagga
ctgacacgggctgacgttgaagccaacgatcatcctgggaatggcaactccaatggagtt
gacagtgacactgaaaatgcggagatcaaattaaaacaaccaaaaaaagaagaagaagaa
gaagacacagaagaagatggagcagctcaacttaccacaccacagcatttgatgaccccc
tttgagctggagggactgtgcaacctcttggggaaactggaggagctgccagtccacaaa
aagtgtgtccctgcaggcatccaggatgctgcagccctgctcgaggacatgagggctgtt
ctgaaggagcattcaaatgataaccccaagctgtcctacactggagagcccattgtcaag
tggcccaaaagaccgtcatggtacgagccctccactcctcctccccctgtcatttaccgt
cctcgcttagccccaagcctccacaagcctcttggtcagcggcccaccaaacgctcctcc
atctctgccctgaggagaagacgggtgcggtgcaagcgctgtgccggctgctgcagaaag
gagtgcggcaactgccagtactgccacgacatgaggaagtttggtgggcctggacgcatg
aagaagggctgcatcacgagacagtgtctaacgcctgctttgccaaacacagctcgatgt
gccatatgtagagaaggggaattagatgaatcagatccgagcactttctcactcatggag
tgctccgtctgctcgcagattgctcatcgtcagtgcattaaggaacctggtgagggaaag
atcaatgacgatttacccagttgctgggaatgtcccaaatgttgtcaaggcaaaagttca
ggatcagagtcttccagcgatgaggatagtggggagtcagagagctcttcctcgttgcca
ccatccaaacttgcataccgtgaaggcattggtgtcagcgatggggtgagacgaggggtg
tgtaccggaccacaatcccgacccacagcaccaccaccttctcagaaactcttactgcag
catcaacagaatcgcaaaagagctagtgcactggagcttagacttaagaagaagataaaa
ctggagcgtagcaaactcttagtgaaacagtcggcactagatcgttctcctaggctgctg
agctccaggctgctgtccaggctgcgctctccaaccagcagactatctcagggcagaggt
ctttaccacggctctccaggaaggacccagtccttcctccagcagcagtcttcccgcagt
ctggtacttgagtctaagggagagccccgcagagggaggggaagaggggtgaggctgcgg
ggaggaggagcaggaagaggttctggaggtggcagaggtcatggagacttggaggaggag
agtgacgacagcagcagcagcagcagcagcagctccaccagcagcagcagcagcagcagc
agcgacgaggaagaggagagggagcagaacagtgggaagggaggggataaagagaaccag
cctcagtcgagaagaggacaagcagccaaagaagaagaggaagcgattgaggtggccaac
caaaacggtgcagaggatgaagatgaggaggagattgagcaaaacagtcaaacaggggac
aaggatggctcatatcttaaagtgacactccaaaggccaaccaagaccaagcgggaccca
tcagccattgtccccaagctagaggctatcgcccctcaagctgctacttccacattaccc
aatcagactagacccctcgccagacccccaattagaattcgtggcgcctgtcctgatcaa
tactccaatagacacacccccccacatactcgtagtggacacacagactctcgcacatcc
cactcagagaggctggaggtctctaaaagacagaggccaaacaggccagctaaactgagc
aatggtgcttcctgttcttcatcctcagagcttacccatctccgcatccctctgtccgcc
ctgcaggagggagggagtgagacggaccgggagagcggtcttggtgggccgggatgtgag
cgggaggtgtgggtgtctgtcttccgctacttaaatcgagcagatctctgcatctgcatg
gctgtcagcaagaactggtacaaatggtgtttagacaagcggctttgggcgcggattgac
ctgagcatcaagcgcactgttactcctcaggccctaacaggcatcataaagagacagcct
gtgacgctcgatctgtcatggaccaacatctctaaaaagcagctcaactggcttgttgga
cgcctgcctgcgcttaaggatctgatggtggcaggttgttcctggtcgtctatatcagct
ctctgctcctctggttgccctctcctccgttctctggacctgcggtacgcagacggggtc
aaagactctcagatcagggatcttgtcagccctccaggctgcgacaatcgcagtcagttg
cggaccatgcagtgtttacgactagcaggcctggacatcactgactccactctgcgcctg
gtgattcgccacatgccccatctaacaaaactggacctctcccactgcaacagcctcact
gaccactccatcaacctgctcacagcagtgggctcctccacccggaacacgctgatagaa
ctcaaccttggaggctgcagtaaactgacagacacgtgtctaaagtatctccgccgcctc
tcctgcatctcactgcttgatctgcgaggctgcaaaggggtctcccgcaaggcctgtgag
gccttcatctccgagctgtcagtcaacacgctctactgcctatcggatgaaaaactgatc
cagaggatatcctaa
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integrated database retrieval system
