Hippoglossus hippoglossus (Atlantic halibut): 117769016
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Entry
117769016 CDS
T07778
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117769016 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117769016 (kdm2ab)
04121 Ubiquitin system [BR:
hhip04121
]
117769016 (kdm2ab)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117769016 (kdm2ab)
Enzymes [BR:
hhip01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117769016 (kdm2ab)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117769016 (kdm2ab)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117769016 (kdm2ab)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117769016 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117769016 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
SR-25
LRR_6
Cupin_1
C1_1
LRR_8
Motif
Other DBs
NCBI-GeneID:
117769016
NCBI-ProteinID:
XP_034453454
LinkDB
All DBs
Position
10:complement(14551265..14564972)
Genome browser
AA seq
1304 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCDRFRSDLVKHMEGKDF
TFEYIQREGLREPIIFKTADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIQLNQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGKG
LTRADVEANDHPGNGNSNGVDSDTENAEIKLKQPKKEEEEEDTEEDGAAQLTTPQHLMTP
FELEGLCNLLGKLEELPVHKKCVPAGIQDAAALLEDMRAVLKEHSNDNPKLSYTGEPIVK
WPKRPSWYEPSTPPPPVIYRPRLAPSLHKPLGQRPTKRSSISALRRRRVRCKRCAGCCRK
ECGNCQYCHDMRKFGGPGRMKKGCITRQCLTPALPNTARCAICREGELDESDPSTFSLME
CSVCSQIAHRQCIKEPGEGKINDDLPSCWECPKCCQGKSSGSESSSDEDSGESESSSSLP
PSKLAYREGIGVSDGVRRGVCTGPQSRPTAPPPSQKLLLQHQQNRKRASALELRLKKKIK
LERSKLLVKQSALDRSPRLLSSRLLSRLRSPTSRLSQGRGLYHGSPGRTQSFLQQQSSRS
LVLESKGEPRRGRGRGVRLRGGGAGRGSGGGRGHGDLEEESDDSSSSSSSSSTSSSSSSS
SDEEEEREQNSGKGGDKENQPQSRRGQAAKEEEEAIEVANQNGAEDEDEEEIEQNSQTGD
KDGSYLKVTLQRPTKTKRDPSAIVPKLEAIAPQAATSTLPNQTRPLARPPIRIRGACPDQ
YSNRHTPPHTRSGHTDSRTSHSERLEVSKRQRPNRPAKLSNGASCSSSSELTHLRIPLSA
LQEGGSETDRESGLGGPGCEREVWVSVFRYLNRADLCICMAVSKNWYKWCLDKRLWARID
LSIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPALKDLMVAGCSWSSISA
LCSSGCPLLRSLDLRYADGVKDSQIRDLVSPPGCDNRSQLRTMQCLRLAGLDITDSTLRL
VIRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLIELNLGGCSKLTDTCLKYLRRL
SCISLLDLRGCKGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcatacacggtacagcaaacgcctgcgtacaggcacacggcgccgctac
caggacgatggaatctcagatgatgaaattgaagggaaacgaatgtttgacctggatgaa
aagttgcagtgcgacaggtttcgctcagatttggtcaaacacatggaaggcaaagatttc
acatttgaatacatccagagggaagggctcagggaaccaatcatctttaagacagctgat
ggtcttggaatacaaatgccagaccctgacttcagtgtgagtgatgtcaagttgtttgta
ggtagtcgacgaatcgttgatgtgatggacgtgaacacccagaagggaatcgagatgtca
atggctcagtggcgacgctactatgagacgccaccatcagaaagagaaaaactctacaat
gtcatcagcctggagttcagccacaccaggctggagaatctagtcaaacgaccagcttcg
gtggaccttattgactgggtggacaacatgtggccgcgtcatctcaaggagcgacaaaga
gactccacaaatgccatcatagacatgcactatcccaaagtacagaagtattgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttcagtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccacagaacctggag
atgtatgagaactgggttttatcaggaaaacagggagacatcttcttgggggacaagtgt
catgactgtcagaggatacaactcaaccagggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacacgccagaggacacgttggtgtttgggggaaatttcctccatagc
tttaacatcccgatgcagctcaacatctacagcattgaggatcgcacacgggtgccagcg
aagttccgttaccctttctactatgagatgtgctggtatgtcctggagagatacctctac
tgtctgacaaacatctcacacctcacacctgagttccagaaatactcccttggcaaagga
ctgacacgggctgacgttgaagccaacgatcatcctgggaatggcaactccaatggagtt
gacagtgacactgaaaatgcggagatcaaattaaaacaaccaaaaaaagaagaagaagaa
gaagacacagaagaagatggagcagctcaacttaccacaccacagcatttgatgaccccc
tttgagctggagggactgtgcaacctcttggggaaactggaggagctgccagtccacaaa
aagtgtgtccctgcaggcatccaggatgctgcagccctgctcgaggacatgagggctgtt
ctgaaggagcattcaaatgataaccccaagctgtcctacactggagagcccattgtcaag
tggcccaaaagaccgtcatggtacgagccctccactcctcctccccctgtcatttaccgt
cctcgcttagccccaagcctccacaagcctcttggtcagcggcccaccaaacgctcctcc
atctctgccctgaggagaagacgggtgcggtgcaagcgctgtgccggctgctgcagaaag
gagtgcggcaactgccagtactgccacgacatgaggaagtttggtgggcctggacgcatg
aagaagggctgcatcacgagacagtgtctaacgcctgctttgccaaacacagctcgatgt
gccatatgtagagaaggggaattagatgaatcagatccgagcactttctcactcatggag
tgctccgtctgctcgcagattgctcatcgtcagtgcattaaggaacctggtgagggaaag
atcaatgacgatttacccagttgctgggaatgtcccaaatgttgtcaaggcaaaagttca
ggatcagagtcttccagcgatgaggatagtggggagtcagagagctcttcctcgttgcca
ccatccaaacttgcataccgtgaaggcattggtgtcagcgatggggtgagacgaggggtg
tgtaccggaccacaatcccgacccacagcaccaccaccttctcagaaactcttactgcag
catcaacagaatcgcaaaagagctagtgcactggagcttagacttaagaagaagataaaa
ctggagcgtagcaaactcttagtgaaacagtcggcactagatcgttctcctaggctgctg
agctccaggctgctgtccaggctgcgctctccaaccagcagactatctcagggcagaggt
ctttaccacggctctccaggaaggacccagtccttcctccagcagcagtcttcccgcagt
ctggtacttgagtctaagggagagccccgcagagggaggggaagaggggtgaggctgcgg
ggaggaggagcaggaagaggttctggaggtggcagaggtcatggagacttggaggaggag
agtgacgacagcagcagcagcagcagcagcagctccaccagcagcagcagcagcagcagc
agcgacgaggaagaggagagggagcagaacagtgggaagggaggggataaagagaaccag
cctcagtcgagaagaggacaagcagccaaagaagaagaggaagcgattgaggtggccaac
caaaacggtgcagaggatgaagatgaggaggagattgagcaaaacagtcaaacaggggac
aaggatggctcatatcttaaagtgacactccaaaggccaaccaagaccaagcgggaccca
tcagccattgtccccaagctagaggctatcgcccctcaagctgctacttccacattaccc
aatcagactagacccctcgccagacccccaattagaattcgtggcgcctgtcctgatcaa
tactccaatagacacacccccccacatactcgtagtggacacacagactctcgcacatcc
cactcagagaggctggaggtctctaaaagacagaggccaaacaggccagctaaactgagc
aatggtgcttcctgttcttcatcctcagagcttacccatctccgcatccctctgtccgcc
ctgcaggagggagggagtgagacggaccgggagagcggtcttggtgggccgggatgtgag
cgggaggtgtgggtgtctgtcttccgctacttaaatcgagcagatctctgcatctgcatg
gctgtcagcaagaactggtacaaatggtgtttagacaagcggctttgggcgcggattgac
ctgagcatcaagcgcactgttactcctcaggccctaacaggcatcataaagagacagcct
gtgacgctcgatctgtcatggaccaacatctctaaaaagcagctcaactggcttgttgga
cgcctgcctgcgcttaaggatctgatggtggcaggttgttcctggtcgtctatatcagct
ctctgctcctctggttgccctctcctccgttctctggacctgcggtacgcagacggggtc
aaagactctcagatcagggatcttgtcagccctccaggctgcgacaatcgcagtcagttg
cggaccatgcagtgtttacgactagcaggcctggacatcactgactccactctgcgcctg
gtgattcgccacatgccccatctaacaaaactggacctctcccactgcaacagcctcact
gaccactccatcaacctgctcacagcagtgggctcctccacccggaacacgctgatagaa
ctcaaccttggaggctgcagtaaactgacagacacgtgtctaaagtatctccgccgcctc
tcctgcatctcactgcttgatctgcgaggctgcaaaggggtctcccgcaaggcctgtgag
gccttcatctccgagctgtcagtcaacacgctctactgcctatcggatgaaaaactgatc
cagaggatatcctaa
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