KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117771243
Entry
117771243         CDS       T07778                                 
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010  MAPK signaling pathway
hhip04137  Mitophagy - animal
hhip04141  Protein processing in endoplasmic reticulum
hhip04210  Apoptosis
hhip04217  Necroptosis
hhip04621  NOD-like receptor signaling pathway
hhip04622  RIG-I-like receptor signaling pathway
hhip04920  Adipocytokine signaling pathway
hhip05132  Salmonella infection
hhip05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117771243 (traf2b)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117771243 (traf2b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    117771243 (traf2b)
  09143 Cell growth and death
   04210 Apoptosis
    117771243 (traf2b)
   04217 Necroptosis
    117771243 (traf2b)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    117771243 (traf2b)
   04622 RIG-I-like receptor signaling pathway
    117771243 (traf2b)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117771243 (traf2b)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117771243 (traf2b)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117771243 (traf2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hhip03019]
    117771243 (traf2b)
   04121 Ubiquitin system [BR:hhip04121]
    117771243 (traf2b)
Enzymes [BR:hhip01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117771243 (traf2b)
Messenger RNA biogenesis [BR:hhip03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     117771243 (traf2b)
Ubiquitin system [BR:hhip04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    117771243 (traf2b)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING zf-C3HC4_4 zf-RING_5 zf-C3HC4_2 zf-C3HC4_3 Sina_ZnF zf-RING_2 zf-RING_6 ATG16 RING_XB3-XBAT31 zf-RING_UBOX TRAFD1-XIAF1_ZnF zf-C3HC4_5 zf_UBZ
Other DBs
NCBI-GeneID: 117771243
NCBI-ProteinID: XP_034457249
LinkDB
Position
12:complement(10868726..10880136)
AA seq 520 aa
MARISLDCANSLPGIPLSVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKQLTSS
GPKPCEACRQEEIYEEPISILHSNEAFPDNAAGREIASLPARCLNQGCNWTGSIKEYEAQ
HESQCDFDRVQCEACKTSILLSDKPRHNERECEARTLNCKYCKTTFNFKEIKAHDEICLK
FPLQCKDCGKKKIPREKFNDHSRTCAKSKSACPFSEVGCKFVVDNGKLSDHEHSSTMEHL
RLLLPMVMSVGRGRAEASGPGEWQEDSGLGLYRAPEEGVSIDAGAEASPQSVDVEKKVNA
LQNIVCVLNREVERSTVTLEAFSHQHRLDQEKIEDLSNKVRQLERTLNMRDLQLSETEHL
LRELQFCTYDGIFVWKVSDFARRRQDAVGGRTPAMFSPAFYSSKYGYKMCLRLYLNGDGT
GRGTHLSLFFVVMRGRYDALMKWPFSQKVTLMLLDQNNREHIIDAFRPDVTSTSFQRPIS
EMNIASGCPLFCPLAKLAGKSPYLRDDTIFIKAIVDLTGL
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggcccgaatatcgctggactgtgcaaactctttaccggggatcccactcagtgttctc
tcagtgcccatggagaataaatacaaatgtcagcagtgtctccaggtcctgaggaagccc
gttcaggctcagtgcggccatcgcttctgtgtacactgcttcaagcagctcaccagttct
gggccaaagccttgtgaagcctgccgccaggaggaaatatatgaggagcctatatccatc
cttcatagtaatgaggcgtttccagacaatgcagcaggtcgagaaattgcaagtcttcca
gccaggtgtttgaaccaaggctgcaattggacgggctctataaaagagtatgaggctcag
catgaaagccaatgcgactttgatcgagttcagtgcgaggcctgcaaaacctcgatcctg
ctctcggacaagccccgccacaatgagagagaatgtgaggccagaactctcaactgtaaa
tactgcaagacgactttcaactttaaagaaatcaaggcccatgatgaaatctgcctgaag
ttcccattacaatgtaaagactgtggcaagaagaagatcccaagagaaaagttcaatgat
cacagcagaacctgtgccaagtcgaagagtgcctgtccattcagtgaagtgggctgcaaa
tttgtggtggacaacgggaagctcagtgaccatgagcacagcagcaccatggagcacttg
cgtctgctgctgcccatggtgatgtcagtgggtcggggacgtgcagaggcttcaggtcct
ggcgagtggcaggaggactctggtctgggcctgtacagggctcctgaggagggagtcagt
atagacgctggagctgaagcctccccacagtccgtggacgtggaaaaaaaggtgaatgct
ttacaaaacatagtgtgtgtcttgaaccgtgaagtggagcgcagcactgttacattggaa
gctttctcgcatcaacatcgcttagaccaggaaaagattgaggatctgtcaaacaaagta
cgacagctggagaggacgctgaatatgagagacttgcagctgtcggagaccgaacatctg
ctgcgagaactccagttctgcacctacgatgggatatttgtctggaaagtctctgacttt
gcgcgccgcagacaggacgctgttggtgggcggactcctgcaatgttctcacctgccttt
tactccagcaagtacggctacaaaatgtgtctgaggctgtatttgaacggcgatggaaca
ggacggggaacgcacctttcgctgttctttgtggtcatgaggggccggtatgacgctctg
atgaaatggccattcagtcagaaggtgactctgatgctcttggatcagaataacagggag
cacattatcgacgctttccgccctgatgtcacctccacatccttccagcggccgatcagt
gagatgaacatcgccagtggctgcccgttgttctgcccactggctaaattggccggcaag
agcccctatttgagggatgacacaattttcatcaaagccatagtcgacctcacaggctta
tag

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