Hippoglossus hippoglossus (Atlantic halibut): 117771259
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Entry
117771259 CDS
T07778
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010
MAPK signaling pathway
hhip04137
Mitophagy - animal
hhip04141
Protein processing in endoplasmic reticulum
hhip04210
Apoptosis
hhip04217
Necroptosis
hhip04621
NOD-like receptor signaling pathway
hhip04622
RIG-I-like receptor signaling pathway
hhip04920
Adipocytokine signaling pathway
hhip05132
Salmonella infection
hhip05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117771259
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117771259
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117771259
09143 Cell growth and death
04210 Apoptosis
117771259
04217 Necroptosis
117771259
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117771259
04622 RIG-I-like receptor signaling pathway
117771259
09152 Endocrine system
04920 Adipocytokine signaling pathway
117771259
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117771259
09171 Infectious disease: bacterial
05132 Salmonella infection
117771259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117771259
04121 Ubiquitin system [BR:
hhip04121
]
117771259
Enzymes [BR:
hhip01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117771259
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117771259
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117771259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
ATG16
zf-C3HC4_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
117771259
NCBI-ProteinID:
XP_034457312
LinkDB
All DBs
Position
12:complement(5360195..5374593)
Genome browser
AA seq
599 aa
AA seq
DB search
MAAQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCSACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINESCTWKGSIKE
YELNHEGKCEFMIIPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDISVEKEKIHEHERTYA
YEHLNLLLHYIMGMKVSMEGLQPQGLEVAGHKLLELQQSLRELEARVSQLSTTSSGPPVQ
GAAAAAASSSSSSSGPPGPPASAPLPPLPTLAPTLSVSTSFTPLPSSVGAALELQLHSEK
TKVAELGRRCTELEVKSGTFENVVCVLNREVERFATTMEASNRQHKLDQDKIEALSNKVR
QLERTVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFY
TNKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREH
IIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaggaaccgtcccctccttcgtccatggagagcaacaagcccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacata
ctgcgacgaccgtttcaggcccagtgtggacaccgcttctgctcctactgcttcaacagg
acagtcagtaatggaccccagaagtgcagtgcctgcattaaagaggatatttttgaggac
cctacgtccattttgaaacaaggatgtgcttttcctgacaacgctgttcgaagggaagtt
gagaacctatcagctgtttgtatcaatgaaagttgcacttggaaaggcagcataaaagag
tatgagctgaaccacgaggggaagtgtgagttcatgatcatcccctgcccgtcctgcaaa
gaacgaatccgcttcaacgaacaggagcgccataacgagcgagagtgcccggagaggacg
ctcaactgcaaatactgcaaggagccatttcacttcaaaaacatcaaggcacatgatgag
atctgtcccaagtacccgatgatctgtgaaggctgcgccaagaagaaaatacccagagag
aagtatgtggaccatattaagttctgcagcaaattcagaactccgtgtcgatttcatgtt
gtgggatgtgacatttctgtggagaaggagaagattcacgaacatgagcgcacctacgcc
tacgagcacctcaatctgttgttgcactacatcatgggcatgaaagtgagcatggagggc
ctgcagccccagggactggaagtagccggacacaaactgctggagctccaacagtccctc
agggagctcgaggccagagtctcccagctcagcaccacctcctctgggcctcccgtgcag
ggagccgccgccgccgccgcctcctcctcatcctccagctccggtccccccggtccacct
gcttcagctcctctccccccacttcccactctagctcccaccctctctgtgtccacctct
ttcacaccattgcccagctcggtgggagcagcgctggagctccagctccacagtgagaag
accaaggtggccgagctggggcgcaggtgcacggagctggaggtcaaatcaggaacgttt
gaaaatgtggtgtgtgtgctgaacagggaggtggagaggtttgccaccaccatggaggcc
agcaaccgtcagcataaactggaccaggataagatcgaggctctcagtaataaggtgcga
cagctggagaggacagtggggctgaaggacctgacagttgctgagatggagggccggctc
agagaaatgtctgccaccaccttcgacggcgtctttgtctggaggatctcagattttgcc
aaaaagagacaggatgcgattgccggtcgagcccctgccatgttctcaccagccttctac
accaacaagtatggctataagatgtgtctgcggatctatctgaatggagatgggacgggg
cgtggcagccacttgtccttgttctttgtggtgatgagggggctgagtgacgctctgctc
aaatggcccttcaaccagaaggtgacattgatgctgctggaccagagcaacagggagcac
atcatcgacgcctttcgacctgatgtcacgtcctcctccttccagagacccgtgagcgag
atgaacatcgccagcggctgtccgctcttctgcccgctctccaagctcgatgccaagaac
tcatacatccgcgacgacaccattttcatcaaggcgatcgtggacctcactggcctctag
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