Hippoglossus hippoglossus (Atlantic halibut): 117774162
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Entry
117774162 CDS
T07778
Symbol
trpc6a
Name
(RefSeq) short transient receptor potential channel 6a
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117774162 (trpc6a)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117774162 (trpc6a)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
YVC1_C
DUF6744
DUF2516
Motif
Other DBs
NCBI-GeneID:
117774162
NCBI-ProteinID:
XP_034462247
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Position
14:12514164..12523717
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AA seq
881 aa
AA seq
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MNHKPLEPYYKPVGYTNSPRARSRDNLLTYDDLGEENCCTAGRSFGYSSSEMQLMARLSA
VKRRQALRGPSYMFSAPSVSLSEVEQRFLEAAEYGNIPEVRRMLLHMPNLNVNAVDYMGQ
NALQLAVSNEHLEVTELLLGRADLARVGDALLLAISKGYIRITETLLSHPAFRDSHRQTA
SPAQADMLDDFYAYDEDGTRFSHDVTPVILAAHCQEYEIVHTLLSKGARINPPHDYFCSC
DSCNYQQQFDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSNELAMLANIEKEFK
NDYCRLSSQCKDYVVGLLDLCRSTEEVEAILSGEEDSEDSYDLPGRPSLTRLKLAIKYEL
KKFVAHPNCQQQLLGIWFENLPGLRQQTTAIKLLVVLAVAIGLPGLAVAYWIAPCSRVGK
VMRSPFMRFVAHASSFTIFLGLLILNAADRFAGTTHLPNMTHHQHPGGAHLTSDPLLLYR
MTTTPFTCMEILIISWVIGMIWAEVKEIWSQGLGEYLVEPWNFLDFGMLAIFLASFCCRF
SALRHADLAQTYVHTHYTTLINVTLPPEIHYFTLARLYWLPSDPQLVSEGLYAVAVVLSF
SRIAYILPANESFGPLQISLGRTVKDIFKFMVIFLLVFLAFMIGMFNLYSYYLGAKQNDA
FTTLEESFKTLFWAIFGLSEVKSVVINNGHKFIENIGYVLYGVYNVTMVIVLLNMLIAMI
NSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSMLGMGTGIKTLLLHY
VAGHREDKTETQLNQLGVDKTSGYGTSTSPSRYQKIMKRLIKRYIIKAQADRESDEITEG
ELKEIKQDISSLRYELLEEKSQSKDTLDGLLKRMGEISSSS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacaaaccactggagccttattataagcctgtgggttacactaacagcccgagg
gccaggagccgtgataacctgttgacctacgatgatttgggagaggaaaactgctgcact
gcaggacgaagctttggctacagcagctcggagatgcagctcatggctcgcctcagcgcc
gttaaacgacgccaggcccttcgtggtccttcatacatgttctctgcaccttcagtcagc
ctgtctgaggttgagcagcgtttcctggaggcagccgaatacggcaacataccagaggtg
cgacgcatgttgctccacatgcccaacttgaatgtcaatgctgtggactacatgggccag
aatgcattgcagctggctgtgtccaatgagcatctggaggtgacagagctgctgctgggg
agggcggatttggccagagtgggtgacgcccttctgttagccatcagtaaaggttatatt
cgtatcacagagaccctgttgagtcaccctgcatttagagattcccatcgtcaaacagcg
agccctgctcaagctgacatgttggatgacttctacgcttatgatgaggacgggacgagg
ttttcccatgatgtgactccagtgatacttgcagcacactgccaggaatacgagatagtt
cacaccctgctgagtaaaggcgctcgcatcaatcccccccatgactacttctgcagctgc
gactcctgtaactaccagcagcagtttgactccttcagccactcgcgatcaaggatcaat
gcctacagaggcctcgccagtcctgcttacctctccttgtccaacgaggacccggtgctg
gccgccctggagctcagcaatgaactggccatgctggctaatattgagaaagaatttaag
aacgactactgccgcctgtcgagccagtgtaaggactatgtggtgggcctcctggatctg
tgccgcagcacagaggaggtggaggccatactgagcggagaagaagactctgaagacagc
tatgatctcccaggtcgcccctcacttacaaggctcaaattagccatcaaatatgaactg
aaaaagtttgtggctcatcctaactgccagcagcagctgctcggtatctggtttgagaat
ctacccggactgagacaacagaccactgctatcaaactgctggtggtgctggcggtggct
attggacttcctggactggcggtggcttactggatcgctccgtgcagcagagtggggaaa
gtaatgcgcagccccttcatgaggtttgtggcccatgcctcgtccttcacaattttcctg
ggtcttctcatcctgaatgctgccgaccgtttcgcaggcaccacccatttaccaaacatg
acccaccatcagcacccaggaggagcacacctcacctcggacccactgctgctctaccgc
atgaccacgacgcccttcacatgtatggagatcctcatcatttcatgggtcatcggtatg
atctgggctgaggtgaaggagatctggagtcagggactgggggagtatctggtcgagccg
tggaacttcctggactttgggatgctggcaatcttcctcgcctccttttgctgccgcttc
tctgctctgagacacgctgacttagcacagacctatgtacacacacactacacaacactg
attaatgtcacactgccccccgagatacactacttcacactggcacgtctctactggttg
ccgtcagatccccagctggtgtcagagggcctgtatgcagttgcagtggttctgagcttc
tctcggattgcttacatcctcccagccaacgagagcttcggtccactgcagatctcttta
gggaggaccgtcaaggacatcttcaagttcatggtcatcttcctcctggtcttcctggcg
ttcatgatcggcatgttcaacctgtactcctactacctgggggcaaagcagaacgacgcc
ttcaccaccctggaggagagcttcaagacattattctgggctatatttgggctgtctgag
gtcaagtccgtcgtgatcaacaacggacacaaattcatcgagaacatcggctacgtgctg
tacggggtctacaatgttaccatggtgatagtgttgctcaacatgctcatcgccatgatt
aacagttccttccaggagattgaggatgatgctgatgtcgaatggaagttcgctcgggcc
aaactctggttctcgtactttgaggaggggaggacgctccctgtgccctttaacctggtg
cccagtcccaagtccatgctgggaatgggcacaggtatcaagaccctgctgctgcactat
gtggcaggacacagagaggacaaaactgagacacagctcaatcagctcggagtggacaaa
acttcaggatatggaacttcaaccagcccgtccaggtatcagaagatcatgaagcgactg
ataaaacgttacatcatcaaagcccaagctgacagagagagcgacgagatcactgaaggt
gagctgaaagagatcaagcaggacatctccagcctgcgatatgagctgctcgaggagaaa
tcccagagcaaggacacgctggacggactgctgaagagaatgggagagatcagttcatct
tcatag
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