KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117775440
Entry
117775440         CDS       T07778                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117775440 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hhip03041]
    117775440 (smndc1)
Spliceosome [BR:hhip03041]
 Complex A
  U2 snRNP components
   U2 related factors
    117775440 (smndc1)
 Complex B
    117775440 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    117775440 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR RuBisCO_small RskA_C
Other DBs
NCBI-GeneID: 117775440
NCBI-ProteinID: XP_034464459
LinkDB
Position
15:8862261..8867276
AA seq 238 aa
MSDDLVKQLSSYKAQLQQVEVALSTDQDNEDLLKLQKDLQEVIDLTKDLLTAQPSDGAST
TNGSDTVPVKHSWKVGNRCMAQWSQDGQVYEAEIEEIDRENGTAAVTFSGYGNAEVIPLQ
NLKPAEEGKRSDEDGNMKPKSRKEQIAEQREYKKKKAQKKVLRMKELEQEREEQKSKWQM
FNNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcggacgacctggtgaaacagttgagcagctacaaagctcagctgcagcaagtggaa
gtggctctatccaccgatcaagacaatgaagatctgctcaagctccagaaagacttacag
gaagtcatcgatttgactaaagacctcctgaccgcacagcccagtgatggtgcgtccacc
accaacggctccgacactgtccccgtgaagcacagctggaaagtggggaacaggtgtatg
gctcagtggagtcaggatggacaggtgtatgaggctgagattgaggagatagaccgagag
aacggcactgcagctgttaccttctctggatacgggaacgccgaagtgatccctctgcag
aacctcaaaccggcagaggaggggaaacgttctgatgaggacgggaacatgaagcccaaa
tcaaggaaagaacaaatagcagagcagagagaatataagaagaagaaagcccagaagaag
gtactgagaatgaaggagttggagcaggagagggaggagcagaagtcaaagtggcaaatg
ttcaacaacaaagcctactctaagaacaagaagggacaggtaaagaggagcatatttgcg
tctccagagagcgtgaatggaaaggtcggagtgggaacatgtggtattgcagacaagcca
atgacccagtacaacgacacgtcaaaatacaacgtcagacatctaatgccccaatga

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