Halorhodospira halochloris: HH1059_09570
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Entry
HH1059_09570 CDS
T06158
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhk
Halorhodospira halochloris
Pathway
hhk03030
DNA replication
hhk03410
Base excision repair
hhk03420
Nucleotide excision repair
hhk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH1059_09570 (ligA)
03410 Base excision repair
HH1059_09570 (ligA)
03420 Nucleotide excision repair
HH1059_09570 (ligA)
03430 Mismatch repair
HH1059_09570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhk03032
]
HH1059_09570 (ligA)
03400 DNA repair and recombination proteins [BR:
hhk03400
]
HH1059_09570 (ligA)
Enzymes [BR:
hhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HH1059_09570 (ligA)
DNA replication proteins [BR:
hhk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HH1059_09570 (ligA)
DNA repair and recombination proteins [BR:
hhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HH1059_09570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH1059_09570 (ligA)
MMR (mismatch excision repair)
DNA ligase
HH1059_09570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HH1059_09570 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAU57653
UniProt:
A0A120MZS4
LinkDB
All DBs
Position
1029576..1031753
Genome browser
AA seq
725 aa
AA seq
DB search
MSEIDNSKDYAAVQQQVEQLRREIAEHDYRYYVLDRPSIADSEYDALFAELRRLEQSHPE
LITADSPTQRVAGSPQSELATLHHDSPMLSLDNAFEPGDLDDFDRRIRELSGAEQIAYTG
EPKLDGISLSLTYVDGQLVRAGTRGDGRAGEDVTANVRTIGSVPLRLRGSGYPARFEVRG
EVVIRKADFEALNEQRWQAGERPFANPRNAAAGSLRQLDPRITAKRPLTLFVFGVGEPRA
TGALSHWQVLQWLSKWGFRVSEPLRSLSGVEECHRFHQQLIEQRDELEFEIDGAVFKVDD
LATRDELGFTARAPRWAIAFKLPAREATTTVRQIVPSVGRTGKITPLARLEPVDIGGVTV
SRASLHNADELARKDVREGDTVMVRRAGDVIPEITDVVLDKRPGEAQPWRFEERVRACPQ
CGAEVVRLAGEAAHRCVGGLSCPAQLEGAVQHFASRRALDIDGLGEKIIEQLVAKGLVRD
VADLFYLRHEQLAGLERMGDKSADNLLNALARARRSSLDRFIYALGIMHVGEVTAQRLAA
AASTLCQEIAPADSADDSRGASVLLRQYLGLPEQSHITSEALLRIMAAPVEELEQLEDIG
PVVAQSIVRFFAEEHNRGVIERLCAAGVSWPEPRQPGGSAGEAGGEQAPLSGKSIVLTGS
LQGMTRSEAKAAIERQGGKVTGSVSRRTDYVVAGEDAGSKLSKARELGITVLDEGEFTQL
CSKDC
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaaatcgataattcaaaagactacgctgcagtgcagcaacaagtcgagcagtta
cgccgcgaaatcgccgaacacgattatcgctactatgtgcttgatcggccaagcatagcc
gactccgagtacgatgccctctttgccgaactgcggcgccttgagcaaagccacccggaa
ctgataactgccgattcgccgacccagcgggttgcggggagtccgcagagtgagctggca
acactccatcatgacagtcctatgctctccctggacaatgccttcgaaccgggcgatctc
gacgactttgaccggcggattcgggaactcagtggcgctgaacagatagcctacaccggt
gaacccaaactcgatggcatctccctgagcctgacctacgttgatgggcagctagtgcgc
gcgggcacccgcggtgacgggcgggctggtgaggatgttaccgctaatgtccgtaccatt
ggcagtgtaccgttgcgcctgcgtggtagcggctaccctgcgcgctttgaggtgcgcggc
gaggttgtgatccgcaaggcggatttcgaggcactcaatgagcagcgttggcaagccggg
gagcgcccattcgccaatccgcgcaacgctgctgccggttcgctgcgtcagctcgatcca
cggattaccgccaagcgcccgttaaccctctttgtcttcggggtaggcgagccgcgtgct
accggtgcgctcagccactggcaggttctccagtggctaagcaagtggggttttcgggta
agtgagccgctgcgcagcctcagcggagtagaggagtgccaccgcttccatcagcagctc
attgagcagcgtgatgagctagagttcgagatcgatggcgcggtgttcaaggtagatgat
ttggcgacgcgtgacgagctcggctttactgcccgtgccccgcgctgggctattgccttt
aagctgccggcccgtgaggcgacaactacggttcgccagatcgtcccctcggtgggtcgc
accggtaagatcaccccgttggcccgcttggagccggtcgatatcggtggggtaacggtt
tcgcgagcgagtctgcataatgccgatgaactggcgcgcaaagatgtccgtgaaggggat
acggtgatggtgcgccgggccggcgatgtcatccccgagattaccgatgtggtccttgat
aagcgcccaggcgaggcgcagccctggcgttttgaggagcgtgtgagggcttgtccgcag
tgcggggctgaagtggtgcgccttgccggtgaggcggcccatcggtgtgtcggcgggctc
tcctgtccggcgcagcttgagggagcggtgcagcatttcgcctcgcgccgggccttggat
atagatggcctcggcgaaaagataatcgagcagctggttgctaaggggctggttcgggat
gtcgccgatcttttttacttgcgccacgaacagctcgccggcttggagaggatgggcgat
aaatcggcggataatcttctcaacgccctggctcgagcccggcggagtagtctcgatagg
ttcatctatgcgctcggtattatgcacgtcggcgaagtgactgcgcagcgcttagcggct
gcggcgagcactttgtgccaagagatagcccctgcggatagtgcagatgatagcaggggg
gctagcgtgctattgcgccagtatttggggctgccagagcaatcgcatatcactagcgag
gcgttgttgcggatcatggctgcaccggttgaagagcttgagcagcttgaggatatcgga
ccggtagtcgcgcagtcgatcgttcgcttttttgccgaagagcataaccgtggggtaatt
gagcgcctttgtgctgccggggtaagctggccggaaccgcggcagccaggcggctctgcg
ggcgaagctggtggagagcaggcgcctttgtccggcaagagcattgtcttaaccggcagc
ctacagggtatgacgagaagcgaggccaaggcggctatagaacggcagggcgggaaggta
accggtagcgtctcgcgacggaccgattatgtggttgctggcgaagatgccggcagtaaa
ctgtccaaagcccgggagttagggattacggttttggatgagggggaattcactcaatta
tgttcaaaagactgttga
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