Helicobacter heilmannii: BN341_50
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Entry
BN341_50 CDS
T02626
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhm
Helicobacter heilmannii
Pathway
hhm03030
DNA replication
hhm03410
Base excision repair
hhm03420
Nucleotide excision repair
hhm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN341_50
03410 Base excision repair
BN341_50
03420 Nucleotide excision repair
BN341_50
03430 Mismatch repair
BN341_50
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhm03032
]
BN341_50
03400 DNA repair and recombination proteins [BR:
hhm03400
]
BN341_50
Enzymes [BR:
hhm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN341_50
DNA replication proteins [BR:
hhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN341_50
DNA repair and recombination proteins [BR:
hhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN341_50
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN341_50
MMR (mismatch excision repair)
DNA ligase
BN341_50
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN341_50
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
BRCT
HHH_2
DZR_2
PTCB-BRCT
HHH_5
Zn_ribbon_6
Zn_ribbon_3
DZR
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
CCM11684
LinkDB
All DBs
Position
complement(2215..4437)
Genome browser
AA seq
740 aa
AA seq
DB search
MIQTRQDYYNLVEKLGNLAHHYYVLAQPLVSDEIYDQLYREVVAYEEAHPADILAHSPTQ
RVGGKVVPFLPKQEHKTRMWSLDNVFNFQDLLGWLKRLSDFAKVRLESFICSPKLDGASL
NLYYEGGKLVSASMRGNGVVGELVTHNAKTIHSIPLKIPYQKPIEIRGEVLLLKKDFDAL
NADRLAQNLAPFANARNASVGSLRQLNSSISAQRKLTFYPWGLGFCDEEFTSFKQAMQAV
REWGFLGLDFIACKNAAEIQEAFNTLSTKRPNLPFEADGMVAMLDNLELQRTLGFTIKAP
RFAIAYKFATAQKCTKLLKIINQVGRSGTITPVGVLEPVLVQGALVSRATLDNYTQIEQQ
DLQLNDIVVVIRSGEVIPKILRPLKELRDHSQAKITPPTHCPACATALSPQALNICPVCN
NALLLKNKPNFCSKCAKFFKKPTHCPACATPLSSQQQKCPKCTHKVGMPLVCLDCGGDLV
YREYCTRCDLDLSKRARGLICPNHKCPARIQESIVYFASKQGLEIKGLGDKVVAQLLQVG
LIQGVADLYTLQKQDLLKLEGWQEKRADNLIKSIFHTKHTSLWRFLCALGIEHVGKGTSQ
TLANAFGLEVFSATLEQIVKLKGFESTIASAFVNFLQENKELIATLLSHIAPTPPSIQSL
KAPNINGFFAGKNVVLTGTLSQPRAKICQELEQQGAHIQTSIAKSTDYLICGENPGSKLV
KAQSLGVQILDEKALLSHLS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaacccggcaagactattacaacctcgtggagaagcttggcaacctagcccac
cactactatgtgttggctcaacctttggtgagcgatgagatttacgaccaactctaccgc
gaagttgtggcctatgaagaggcgcaccccgcggacattttagcccactctcccacccaa
cgcgtgggtggcaaagtcgtgcccttcttaccaaagcaagagcataaaacccgcatgtgg
agcttagacaatgtgtttaattttcaagatctcctagggtggcttaagcgtctgagcgat
tttgccaaagtccgcctagagtcttttatttgttcgcccaaactagacggcgcatcactc
aatctctactacgaggggggcaagttagtgagtgccagcatgcggggcaatggggtggtg
ggtgagctggtgacccacaatgctaaaaccatccactccatcccgctcaaaatcccctac
caaaaacccattgaaattcgaggtgaagtgctcttactcaaaaaagactttgatgccctg
aatgccgacagacttgcgcaaaacctagccccctttgccaatgctagaaatgcgagcgtg
ggcagcttgcgccaactcaattccagcatcagcgcacaaagaaaactcaccttctaccca
tgggggctcgggttttgcgatgaagaatttacaagctttaagcaagccatgcaggcagtg
cgtgagtggggctttttgggtttggactttatagcgtgtaaaaatgcggcagagatacaa
gaagccttcaacaccctcagcacaaaacgccctaacttgccctttgaggccgatggcatg
gttgccatgttggataatttagaactccaacgaaccctaggtttcaccatcaaagccccc
cgctttgccattgcctacaaattcgccaccgcccaaaaatgcacaaaacttctaaaaatt
atcaaccaagtagggcgtagcgggaccataacgcccgtaggggtgcttgagccggtgttg
gtgcaaggggcgttggtgtctagggcgactttagacaattacacccaaatagaacaacaa
gatttacaattaaacgacatcgtagtggtgataagaagcggggaggttatccctaaaatc
ctacgccctctaaaagagctaagagaccatagccaggcaaaaatcactccccccacccac
tgccccgcctgtgctactgctttgagccctcaagccctcaatatctgccctgtctgtaac
aacgctctcctacttaaaaataagcccaacttctgctccaaatgcgccaagttctttaaa
aagcccacccactgccccgcctgtgccacgcccctaagctcccaacaacaaaaatgcccc
aagtgtacccacaaggtcggcatgccccttgtgtgtttagattgcgggggggatttggtt
tacagggaatattgcacccgctgcgatttggatttaagcaagcgggctagaggactcatt
tgtcccaatcacaaatgccccgcgaggattcaagagagcatcgtctattttgcctccaaa
cagggcttagaaatcaagggactaggtgataaagtcgtggcgcaactcttgcaagtgggg
ctaatccaaggcgtggcggatttatacacattacaaaagcaggatttattaaaacttgaa
gggtggcaagaaaaaagagcagacaatctcattaaatctatttttcacaccaagcacacc
tcgctgtggcgctttctttgtgctttaggcattgagcatgttggcaaggggacaagccaa
acactagccaatgcctttggactagaggtctttagtgccactcttgaacaaatcgtcaag
cttaagggctttgagagcaccatcgcttccgcctttgtgaacttcttgcaagaaaacaaa
gagctgatcgctacacttttaagccacattgcccccaccccaccctctatccaaagcctt
aaagcaccaaatataaatgggttttttgcgggcaaaaatgtggtactgacgggcacttta
agccagcctagggccaagatttgccaagaactcgagcaacaaggcgcgcacatccaaaca
agcattgccaagagtaccgactacctcatttgtggcgaaaaccccggctcaaagctagta
aaggcgcaaagtctgggcgtgcaaatcttagacgaaaaagccctcttaagccacttaagc
taa
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