Helicobacter pylori Shi169: HPSH169_03160
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Entry
HPSH169_03160 CDS
T02038
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhq
Helicobacter pylori Shi169
Pathway
hhq03030
DNA replication
hhq03410
Base excision repair
hhq03420
Nucleotide excision repair
hhq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPSH169_03160 (ligA)
03410 Base excision repair
HPSH169_03160 (ligA)
03420 Nucleotide excision repair
HPSH169_03160 (ligA)
03430 Mismatch repair
HPSH169_03160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhq03032
]
HPSH169_03160 (ligA)
03400 DNA repair and recombination proteins [BR:
hhq03400
]
HPSH169_03160 (ligA)
Enzymes [BR:
hhq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPSH169_03160 (ligA)
DNA replication proteins [BR:
hhq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPSH169_03160 (ligA)
DNA repair and recombination proteins [BR:
hhq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPSH169_03160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSH169_03160 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPSH169_03160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPSH169_03160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
RNA_ligase
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AFH99330
UniProt:
A0A0E0WDB0
LinkDB
All DBs
Position
complement(645203..647173)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQ
KVGAITPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFPSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIAGIINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFDLLNPKNSDMAKEKQESSSVFSNKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtgagcgatgcggtctatgacgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagccaattcccctacccaa
aaagtgggggctattacccccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaatgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgaaggcgaccactaggggcaacggcttagaaggggaa
ttagtgagcgcaaacgctaaacacatcgctaatatcccccacgctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgctaaccccagaaatgccgcatcagggagt
ttgaggcagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcccaagctttaaggagtgtttggattttattgtttcg
ctaggttttagcgctattcaatacttaagcctaaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattaaagaaagggagggctttttcgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccccaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacacaaaaattgcaggaatcatt
aaccaagtggggcgcagcggggcgatcacaccggtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgtggtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagggacggctcgcaacataagattgagcgccccaaagtttgc
cctatatgttcgcatgagcttttgtgcgaagagatttttacttattgtcaaaacttaaac
tgcccggcaagattgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
cagggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaatttaaaattaaa
aaagctcaaaatctattggacgctattcaaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgaacatatcggcaagggagcgagtaaaacgctagctagatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttattaaaccctaaaaacagcgatatggccaaagaaaagcaagaaagctcttct
gttttcagcaataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagagttgttaaagcgccttaaagaatttgattga
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