Hyaena hyaena (striped hyena): 120239080
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Entry
120239080 CDS
T07257
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
hhv
Hyaena hyaena (striped hyena)
Brite
KEGG Orthology (KO) [BR:
hhv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hhv03036
]
120239080 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
hhv03400
]
120239080 (SMCHD1)
Chromosome and associated proteins [BR:
hhv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120239080 (SMCHD1)
DNA repair and recombination proteins [BR:
hhv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120239080 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
Ig_SMCHD1_6th
Ig_SMCHD1_4th
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120239080
NCBI-ProteinID:
XP_039099120
LinkDB
All DBs
Position
Unknown
AA seq
2000 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRREKESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTVKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITKGPNCVIRGVTARGLVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGVGLDS
SHLKTTFQENTQSISVKGIRFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
DSKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLVKPNNLKLTPSNQQHKTDERG
RANLGVLGVYAPRGEHVMQVRAIYNKNNIEGPIIKLMILPDPEKPIRLNIKYDKDASFLA
GSIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDRED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKIQPATPAVS
NVRSVASRTLAKDLHLIITDDYNNQTGIDLVGTIVAMIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSAEITNLVLAENSPGRDSTEYFIVFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQVSKNIIMYRSLFEASKQLLDEMKCRVEEAKLKEAQLQNELKTHNIDIPATQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKATGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
IGDPVFARDLLTFPDNVEHCETVDTGYCLGTQPGLKAGRFGSLHVVKITHCPTLLTRDGD
RIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNSVIED
LNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKGNDSLRHPTKVEMTDCPIP
PKRMRREASRQNRIITKSDV
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggactggagaggacggtggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgcgaaaaggagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgtgattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgatactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactacttacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtgggatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattatctgctacttctagaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtaata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagtaaacctgcagattcccaagatgttcat
gaacttgtgctttcaaaagaagattttgagaaaaaggagaagaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaagaaaaagatagttttactgctgtggtt
atcacaggagtacaaccagaacacatacagtacttgaaaaattattttcttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acttcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgataccaccctttcttatatgatagagaaacttaccccgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgttttatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccctat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggcttgcaccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacacccttttcaca
aggattttaaatggacaggaacagcgaatgaaaattgatagagaatttgctttatggctg
aaggactgtcatgagaagtatgacaaacaaataaaatttacatcttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcaacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacagtcaagacacttcctctc
ttttatggaagcatagtaaaattttttctttacggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaagcactgtatgatgaagtaaaaact
gtgccaattgcaaagcttgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaagggggaagcaatgcagaaacttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattgcattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtactgaatgaaagtaatgcagacact
tatgcaggaagaccgctaccgtcgaaagcaattaagttttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctcctttccgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaggaaatgatattcagcca
gtttttgaagcaagtggtttatctttgcattatgaagaaataaccaaaggaccaaattgt
gtaattcgaggtgttacagccaggggccttgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttctcgatgaatcagacaatataacaacacag
ccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccagtctatgttgta
gactgcagcagttctggaaccagtattttaacaggatctgcaattcaagtgcaaaacatt
aaaaaagaccagactctgaaagcaaaaatcgaaatacctagttgtaaagatgtggcacct
gtggagaagactattaaactgcttcctagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatgttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctccttcctgatgtacaagtaccaacatctgtgaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaaggcca
cttcctgatgagcctaaacatttaaaatgtgagttaaaaggaggaaaaacagtacagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatctgccttgggaattgctggggttggacttgacagc
tctcatttgaaaactacttttcaggaaaatacacaaagtataagtgtaaaaggcatcaga
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttcttcttatagactggcca
gactcaaaggagtccattccagtgattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggacaatccagcacctgtaccacaggtcaaaataagtcttgtg
aaacctaacaatttaaagctcactccttcaaaccaacaacataaaacagatgaaaggggc
agggctaatttgggagtgttgggtgtttatgcccctagaggagaacatgtgatgcaggtt
agagccatttataacaaaaataacatagaaggacctataattaaattaatgattcttccg
gaccctgaaaaacctattcgtctcaatattaaatatgacaaagatgcttcatttttagca
gggagtattttcactgattttatgattactgttatttctgaagatgacagtatcatcaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacagagaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctacctaatcaacctgtgaagttagttcctaaaatccagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggacgttggccaaagatttacatcttattattacggat
gactacaacaatcaaactggaattgatttggttggcactattgtagctatgattaaaggt
tctaatgaggaagatacagatacaccactctttatcgggaaagttagaacgctggaattt
ccctttgtgaaaggttcagctgaaatcacgaatctagtgctggcagaaaatagtcctgga
agggatagtactgagtattttattgtatttgagcctcagctaccagctttgtcaagaaca
ttagagccatatatcctaccctttatgttttataacgatgttaagaagcagcaacaaatg
gcggcacttacaaaagaaaaggaccaggtatctaagaatattataatgtacagaagttta
tttgaagccagcaaacagcttcttgatgaaatgaagtgccgagttgaagaagcaaaatta
aaagaagctcagttgcaaaatgaacttaaaacacataatattgacattcctgcaacacaa
cagatgccacacattgaagcacttttgaaaagaaagctatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactatactaaagccactggagatgttttg
ggaaagattgcacacttggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcgagtgacatggactgtgttgtcaccctgaccactgatgcggcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattatattttaaacct
attggagatccagtctttgcccgagatttgttaacatttccagacaatgtagaacattgt
gaaacagttgatactggctactgtctgggcactcagccggggctgaaggctggcagattt
gggtctctccatgttgttaaaattacacactgccctacattgctcaccagagacggagat
cgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatggataaa
cttcggggaatggtatttggagctccaataccaaaacagtgcctggtcttaggggaacaa
atagatcttcttcagcagtatcgtactgctgtgaacaagttgaatagtgtgattgaggat
cttaaccgtcagttagagtatcttcacactcctgatatgaagaagaaaaaacaagaactt
gatgaacaagagaaaaatctgaaattaattgagcaaaaactaggtatgactcccacacgt
aagggtaatgactcattgcgccatccaacaaaggtggaaatgactgattgtccaattcct
cctaaaagaatgagaagagaagcttcaagacaaaataggattataaccaaatcagatgtg
tga
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