Haliscomenobacter hydrossis: Halhy_3948
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Entry
Halhy_3948 CDS
T01491
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03030
DNA replication
hhy03410
Base excision repair
hhy03420
Nucleotide excision repair
hhy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Halhy_3948
03410 Base excision repair
Halhy_3948
03420 Nucleotide excision repair
Halhy_3948
03430 Mismatch repair
Halhy_3948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhy03032
]
Halhy_3948
03400 DNA repair and recombination proteins [BR:
hhy03400
]
Halhy_3948
Enzymes [BR:
hhy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Halhy_3948
DNA replication proteins [BR:
hhy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Halhy_3948
DNA repair and recombination proteins [BR:
hhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Halhy_3948
NER (nucleotide excision repair)
GGR (global genome repair) factors
Halhy_3948
MMR (mismatch excision repair)
DNA ligase
Halhy_3948
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Halhy_3948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AEE51796
UniProt:
F4L4C7
LinkDB
All DBs
Position
complement(4997767..4999902)
Genome browser
AA seq
711 aa
AA seq
DB search
MYTQSDQKSLYERSKAYLQADHAVHAQTPAQQHAELCGLIIYHEWRYYIQNDPVLSDYEY
DQLFKLLERLEEVHPELVSADSPSQRVSADLTEDFSQVEHLIPMLSLANSYNAEDLNDWD
ASIKRFLNIDPDTDLDYGVEPKFDGGSIALVYENDVLVRAATRGNGIIGEEITNNAKVIR
SIPLRAEFSKYGIHRVELRGEVLIRKDIFEKMNAKRAAEGITLFANARNTATGGLRIKDP
KEVAKRGLEAFIYTLGYATDQAGNNMLNQFATHLESLELLEKLGFKVPVQERKLCKNIQE
VIDFCNYWQQQRDGYAYEIDGMVAKVNSRELQERSGFTSHHPRWAIAFKFQAKQATSKLL
NVEYQVGKIGSITPVAKLEPVQLAGVTVSSVSLHNEDFITSRDLRLGDTVLVERAGDVIP
YIVKAMDELRDGSEVPIVFPQFCPINDTDTPVELLREGEEAAWRCPNCVCGQQDLQRIIF
HVSKDAMDIDGMGKQIVERFFELGWVRNFADVYNLDFTQVAQLEGFGEKSATKLQAAIEK
AKKNPISRVLYSLSIHHLGKKVSKLLAAEINHVLDLKDWQIEDYTKIKDVGPVVAANAIE
FFQNELNIELIQQMEALGVNLHQTEEDKPKAASADAPLAGKTILFTGSLAKMGRKEAQEK
AEAAGAKNISAVSKNLDILVVGEEAGSKLKKARELGTVMILTEDEFLAMLE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtatacccaatctgaccaaaaatccctttacgaacgctcgaaggcctaccttcaggcc
gaccatgccgtgcatgcccaaaccccggcacaacaacatgctgaattgtgtggcttgatc
atttaccatgagtggcggtactacatccaaaacgaccccgtgctgagtgattacgaatac
gaccaattgttcaaactcttggagcgcctggaagaagtacaccccgagcttgtcagtgcc
gattcacccagccaaagggtatctgccgacctgaccgaagatttttcgcaagtagaacac
ctgatcccaatgttgtctttggccaactcctacaatgccgaagacctcaatgattgggat
gcttccatcaaacggtttctcaacatcgacccggataccgacctggattatggcgtagaa
cccaaatttgacggaggcagtattgccctggtgtacgaaaacgacgtgctggtacgtgcc
gccacccgggggaacgggatcattggtgaagaaatcaccaacaacgccaaagtcatccgc
tcgatccccttgcgggcggagttttccaaatacggcattcaccgggttgaattgcgtgga
gaagtcctgattcgcaaggatatttttgaaaaaatgaacgccaaacgggcggcagaaggc
attaccctttttgccaacgcccgcaataccgccaccggtggattgcgcatcaaagacccc
aaagaagtagccaaacgtggcctggaagcctttatttatacactgggctatgctacagat
caggcgggcaacaacatgctcaaccagtttgctacccacctggaaagcctggaattgctg
gagaaactggggtttaaagtgcccgttcaggaacgcaaattgtgcaaaaacatccaggaa
gtaatcgatttttgcaattattggcaacaacaacgcgatggctacgcttacgaaatcgac
gggatggtggccaaagtgaacagccgggaattgcaggaacgctcgggatttacctcacat
cacccgcgctgggcgattgccttcaagtttcaggccaaacaagccaccagcaaactgctc
aatgtggaataccaggtgggcaaaattggctccattaccccggttgcaaaactggagccc
gtgcaactggcgggcgtaacggtctcctcggtttcgctacacaacgaagattttatcacc
agccgcgacttgcgcctgggggacaccgttctcgtcgaacgtgccggagacgtgattccc
tacatcgtcaaagcgatggatgaactgcgcgacggcagcgaagtccccatcgtttttccc
caattttgccccatcaacgataccgatacccccgtagaattgctgcgggagggagaagaa
gcggcctggcgctgcccaaattgtgtgtgcggccaacaagacttgcaacgcatcattttc
cacgtgtccaaagacgcaatggacattgatggcatgggtaaacagattgtggaacgcttt
tttgaactgggctgggtgcgcaattttgcggatgtgtataacctcgatttcactcaagtc
gcccagttggagggctttggtgaaaaatcggcaaccaagctgcaagcggccattgaaaag
gcgaagaaaaacccgatttcccgggtattgtacagtttgagcatccaccatttgggcaaa
aaagtctccaaactactggccgcagaaatcaaccatgtgctggacttgaaagactggcaa
attgaagactacaccaaaatcaaagacgtaggccccgtagtagccgccaatgccatcgag
ttttttcagaacgaactaaatattgagctcattcaacaaatggaggccttgggcgtcaat
ctgcatcaaaccgaggaagacaaacccaaagctgcatctgccgatgcaccgctggcgggc
aaaaccatcctttttaccggatctctcgctaaaatgggccgcaaagaagcgcaggaaaaa
gcggaggccgccggcgccaaaaatatcagtgcggtaagcaaaaacctggatattctggtt
gtgggggaagaggctggctcgaaattgaaaaaggcgcgggaactggggacggtgatgatt
ttgacggaggatgagtttttggcgatgttggagtag
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