Haemophilus haemolyticus: NCTC10839_00821
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Entry
NCTC10839_00821 CDS
T06216
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhz
Haemophilus haemolyticus
Pathway
hhz03030
DNA replication
hhz03410
Base excision repair
hhz03420
Nucleotide excision repair
hhz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10839_00821 (ligA_1)
03410 Base excision repair
NCTC10839_00821 (ligA_1)
03420 Nucleotide excision repair
NCTC10839_00821 (ligA_1)
03430 Mismatch repair
NCTC10839_00821 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhz03032
]
NCTC10839_00821 (ligA_1)
03400 DNA repair and recombination proteins [BR:
hhz03400
]
NCTC10839_00821 (ligA_1)
Enzymes [BR:
hhz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10839_00821 (ligA_1)
DNA replication proteins [BR:
hhz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10839_00821 (ligA_1)
DNA repair and recombination proteins [BR:
hhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10839_00821 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10839_00821 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NCTC10839_00821 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10839_00821 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
DUF7463
Motif
Other DBs
NCBI-ProteinID:
SQH96938
UniProt:
A0A2X4RD08
LinkDB
All DBs
Position
1:complement(820465..822543)
Genome browser
AA seq
692 aa
AA seq
DB search
MPVYFHSKHTKSAVIFPENFMTNIQTQIDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFH
QLKALELEHPEFLTSDSPTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIED
RLIVLPKPLTFCCEPKLDGLAVSILYVNGILTQAATRGDGTTGEDITANIRTIRNIPLQL
LTDNPPARLEVRGEVFMPHSGFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNITSKRP
LVLNAYGIGIAEGVELPSTHYARLQWLKSIGIPVNPEIRLCNGTNEVLDFYRDIQNKRSS
LGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITP
VAKLEPVFVAGVTVSNATLHNGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPNNA
KPIIFPTNCPVCDSQIIRIEGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLI
EQLVDRELVHTPADLFKLDLTTLTRLERMGAKSAENALNSLEKAKSTTLARFIFALSIRE
VGEATALNLANHFKTLDALKAADLEELQQVPDVGEVVANRIFVFWREAHNVAAVDDLIAQ
GVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKSLLQQLGAKVSGSVSSKTDFVIA
GDAAGSKLAKAQELNITVLTEEEFLEQVNILN
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctattttcactctaaacacacaaaaagtgcggtcattttccccgagaatttt
atgacaaatattcaaactcaaatagacaatctacgcaaaaccttgcgccaatatgaatac
gaatatcatgttctagataatcctaccgtgcctgatagcgaatatgatcgtctatttcat
caactaaaagcgttagaactagaacatcctgaatttcttacttcagactccccaactcaa
cgtgtgggtgcaaagccactttctgggtttagccaaattcgtcatgaaattcccatgctc
tctttagataatgctttttccgatgaagaattcaatgcctttgtaaaacgcattgaagat
cgtttaatcgtattacctaaaccacttaccttctgttgtgaacctaaacttgatggttta
gcagtgagtattttgtatgtaaatggcattctcacccaagctgccactcgcggcgatggc
accacaggcgaagatattacagctaatatccgtactattcgtaatattccattacaactt
ctaacagacaatcctccagcacgtttagaagtgcggggtgaagtttttatgccgcactcg
ggctttgagcgtttaaatgaatatgcgctagaacatggtgaaaaaacttttgctaaccct
cgtaatgcagcggcaggctctttgcgccagcttgatccaaatattacaagtaaacgccca
ttggtattaaatgcttatggtataggaattgctgaaggcgttgaactaccaagtactcat
tatgctcgtttgcaatggctaaaatctatcggtattccagtgaatccagaaattcgttta
tgtaatggcacgaatgaagttttagatttttaccgagatattcagaataaacgaagctcg
ctgggttatgacattgatgggacagtattaaaaatcaatgatatagccttacaaaatgag
ctaggatttatttctaaagcacctcgttgggcgattgcttataagttcccagcccaagaa
gaattaactgtcttaaatgatgttgaattccaagttggccgaacgggcgcaatcacacca
gtcgctaaattagaaccagtatttgttgcaggcgttacagtaagcaatgccaccttacac
aatggtgatgaaattgaacgcttaaatattgctattggcgatactgttgtcattcgtcga
gcaggagatgtgattccacaaattatcggtgtgttacatgaacgccgccctaataatgct
aaaccaattattttcccgacaaattgcccagtgtgcgattctcaaattattcgtattgaa
ggcgaagcggtggctcgctgtacgggaggattattctgtgcagcacaacgcaaagaggcg
ctaaaacattttgtctctcgtaaagccatggatattgatggtgtaggcggaaaattaata
gaacaattagtcgatcgcgaactggttcatacaccagcagacttatttaaacttgattta
actacgctcacacgcctagaaagaatgggcgcaaaatctgcagaaaacgctctcaatagt
cttgagaaagccaaaagcacgactcttgctcgctttatttttgctttaagcatacgtgaa
gtaggtgaggccactgcattaaatcttgcgaatcacttcaaaaccttagatgcgcttaaa
gcagccgatcttgaagagcttcaacaagtacctgatgtaggtgaagtcgtggcaaataga
atttttgtattctggcgtgaagcgcataatgttgccgctgttgatgatttaatcgcacaa
ggcgtacattgggaaaccgtggaagtaaaagaagcaagtgaaaacttattcaaagataaa
accgtcgtcctcaccggcaccctcactcaaatgggtcgcaacgaagcaaaatcattacta
caacaactaggcgccaaagtaagcggctctgtttccagcaaaacggactttgtcatcgct
ggtgacgcagctggatctaaactagccaaagcacaggaactaaatattacagtattaaca
gaagaagaatttttagagcaggttaatattttaaattag
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