Heterobasidion irregulare: HETIRDRAFT_62942
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Entry
HETIRDRAFT_62942 CDS
T03455
Name
(RefSeq) ABC transporter
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_62942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_62942
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
HETIRDRAFT_62942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_25
AAA_29
AAA_15
SMC_N
AAA_28
RsgA_GTPase
AAA_23
PduV-EutP
NACHT
SRP54
ATP-synt_ab
MMR_HSR1
Arf
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
20678623
NCBI-ProteinID:
XP_009543281
JGI:
Hetan2_62942
UniProt:
W4KEF4
LinkDB
All DBs
Position
Unknown
AA seq
284 aa
AA seq
DB search
MDRSLTISVDKLTYRHNPTAEASLLDISIHLPKGSRTILIGANGAGKSTLLQILAGKRLV
TAEGAKIFVEGRDVFRDSPPGVIFLGTEWAMNPVVRGDIVVSHFLDSVGGYRHKERRDRL
LDILDVDLDWHMHAISDGERRRVQLCMGLMMPWDVLLLDEVTVDLDVQVRDDLLSFLKAD
SESRGATILYATHIFDGLNEFPTHIAHMRLGSFVTNPTPWPSAGTNPTVPGGPSLYSVAL
QWLRGDREYRRELERNGRKARGSIKDQSVPSDSETFYKKYDYGH
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggacagatctctaactatatccgtagacaagctgacttatcggcataatcctacagcc
gaagcctctcttttagatatttctatccacctgcctaagggttctcggacgatcctgata
ggtgctaacggagccggaaagtctacacttttgcagatattagcaggaaaacggctggtg
actgcagaaggtgcaaaaatctttgtcgaaggacgagatgtgttccgtgactctcctcct
ggagtcattttcttaggaacggagtgggcgatgaaccctgttgtgagaggggacatcgtg
gtatcccatttcctcgattcagttggcgggtaccgtcataaagagagaagagaccgcttg
ctagacatcctagatgttgatttagactggcatatgcacgccatctctgacggagaacgg
cgacgggtgcagttatgcatgggactgatgatgccttgggacgtgttattacttgatgaa
gttactgttgatcttgatgttcaagttcgcgatgacttgttgagcttcctgaaagcagac
agcgagtcacgaggagcaacaatcctttatgcaacgcacatcttcgatggactcaacgag
tttcccacccatatcgcccacatgcgccttggctcgttcgtgacaaaccccacaccatgg
ccttcagcagggacgaatccgacggtacccggcggtccttctctgtatagcgtagctctt
cagtggctacgaggggatcgtgaatatcgacgtgagctggagcggaacggcagaaaggca
agagggtcaataaaagaccagagcgtaccctctgactcggaaacgttctacaagaaatac
gactacggtcactga
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