KEGG   Heterobasidion irregulare: HETIRDRAFT_62942
Entry
HETIRDRAFT_62942  CDS       T03455                                 
Name
(RefSeq) ABC transporter
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
hir  Heterobasidion irregulare
Pathway
hir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HETIRDRAFT_62942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hir03019]
    HETIRDRAFT_62942
Messenger RNA biogenesis [BR:hir03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     HETIRDRAFT_62942
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_25 AAA_29 AAA_15 SMC_N AAA_28 RsgA_GTPase AAA_23 PduV-EutP NACHT SRP54 ATP-synt_ab MMR_HSR1 Arf VapE-like_dom
Other DBs
NCBI-GeneID: 20678623
NCBI-ProteinID: XP_009543281
JGI: Hetan2_62942
UniProt: W4KEF4
LinkDB
Position
Unknown
AA seq 284 aa
MDRSLTISVDKLTYRHNPTAEASLLDISIHLPKGSRTILIGANGAGKSTLLQILAGKRLV
TAEGAKIFVEGRDVFRDSPPGVIFLGTEWAMNPVVRGDIVVSHFLDSVGGYRHKERRDRL
LDILDVDLDWHMHAISDGERRRVQLCMGLMMPWDVLLLDEVTVDLDVQVRDDLLSFLKAD
SESRGATILYATHIFDGLNEFPTHIAHMRLGSFVTNPTPWPSAGTNPTVPGGPSLYSVAL
QWLRGDREYRRELERNGRKARGSIKDQSVPSDSETFYKKYDYGH
NT seq 855 nt   +upstreamnt  +downstreamnt
atggacagatctctaactatatccgtagacaagctgacttatcggcataatcctacagcc
gaagcctctcttttagatatttctatccacctgcctaagggttctcggacgatcctgata
ggtgctaacggagccggaaagtctacacttttgcagatattagcaggaaaacggctggtg
actgcagaaggtgcaaaaatctttgtcgaaggacgagatgtgttccgtgactctcctcct
ggagtcattttcttaggaacggagtgggcgatgaaccctgttgtgagaggggacatcgtg
gtatcccatttcctcgattcagttggcgggtaccgtcataaagagagaagagaccgcttg
ctagacatcctagatgttgatttagactggcatatgcacgccatctctgacggagaacgg
cgacgggtgcagttatgcatgggactgatgatgccttgggacgtgttattacttgatgaa
gttactgttgatcttgatgttcaagttcgcgatgacttgttgagcttcctgaaagcagac
agcgagtcacgaggagcaacaatcctttatgcaacgcacatcttcgatggactcaacgag
tttcccacccatatcgcccacatgcgccttggctcgttcgtgacaaaccccacaccatgg
ccttcagcagggacgaatccgacggtacccggcggtccttctctgtatagcgtagctctt
cagtggctacgaggggatcgtgaatatcgacgtgagctggagcggaacggcagaaaggca
agagggtcaataaaagaccagagcgtaccctctgactcggaaacgttctacaagaaatac
gactacggtcactga

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