Halioglobus japonicus: BST95_11790
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Entry
BST95_11790 CDS
T04687
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hja
Halioglobus japonicus
Pathway
hja03030
DNA replication
hja03410
Base excision repair
hja03420
Nucleotide excision repair
hja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BST95_11790 (ligA)
03410 Base excision repair
BST95_11790 (ligA)
03420 Nucleotide excision repair
BST95_11790 (ligA)
03430 Mismatch repair
BST95_11790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hja03032
]
BST95_11790 (ligA)
03400 DNA repair and recombination proteins [BR:
hja03400
]
BST95_11790 (ligA)
Enzymes [BR:
hja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BST95_11790 (ligA)
DNA replication proteins [BR:
hja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BST95_11790 (ligA)
DNA repair and recombination proteins [BR:
hja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BST95_11790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BST95_11790 (ligA)
MMR (mismatch excision repair)
DNA ligase
BST95_11790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BST95_11790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
AphA_like
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AQA18819
UniProt:
A0AAP8SNP6
LinkDB
All DBs
Position
2480053..2482095
Genome browser
AA seq
680 aa
AA seq
DB search
MAAVSTQDLRAELDRLRSELRDWNHRYYVLDDPSVPDAEYDRSMRRLQSIEAEHPDWVTP
DSPSQRVGDKPLDQFSQVAHEVPMLSLDNAFDAAELADFERRCLDRLGADAAPLTYNCEP
KLDGIAVSLLYRDGLLERGATRGDGTTGEDITHNVRTIGSIPLRLRGEGYPAVLEVRGEI
YMPRAGFEALNARARERGDKPFVNPRNAAAGSLRQLDARLAAERPLEMCSYGVGLVEGGE
LPEHHSAILACLGQWGLRTNTETDVVQGIEACEAYYEQLAAKRDQLPYDIDGIVYKVDSI
ELQAQLGFVSRAPRWAIARKFPAQEEVTRLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEIERLGAMIGDTVVVRRAGDVIPQVVSVVTERRPDDAAAIRFPDACPVCGSA
VEREADEAVLRCLGGLVCAAQQKAAIRHFASRRAMDVDGLGDKLVDQMVDEGLVENVAGL
YQLTFDQLVGLERMGQKSADKLLKALEQSKQTTLPRFIFALGIREVGEATALNLANHFGS
WADLVAAPEEALLEVDDVGPVVADHLRQFFDSEGSMAVAKALLDAGVEWPAIEVKSAAEL
PFAGQTWVVTGKLEAVGRNEAKSLLQSLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELG
IDVIDEEAFLALLANHGVSP
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atagccgcagtgtctacacaggatttgcgggcggagctcgacaggctgcgcagcgaactg
cgcgactggaatcatcgctactacgtcctcgacgatcccagcgtgccggacgcagaatac
gatcgcagcatgcggcgtctgcagtcgattgaagctgaacaccccgactgggtcaccccc
gattcaccttcacagcgtgttggcgacaaacccctcgatcagttctcgcaagtggcacac
gaagtgcccatgctgtcactggacaatgctttcgacgccgctgaactcgcagattttgaa
cgtcgctgtctggacaggttgggtgccgacgcagcgccgctcacctataactgcgagccc
aagctcgatggcatcgcggtcagtctgctttatcgcgatggcctgctggagcgcggggca
acccgcggtgacggtaccaccggtgaggacattacccacaacgtgcgcaccattggctcc
attcccctgcgtctgaggggcgaaggttacccagccgtactcgaggtgcgcggtgaaatc
tatatgccccgggccggctttgaagcactcaatgcacgtgcgcgggagcgcggtgacaaa
ccttttgtgaatccccgcaacgccgccgcgggcagtctgcgtcaactcgatgccaggctt
gccgcggagcgcccgctggaaatgtgcagctatggtgtgggcctggtggaaggtggcgaa
cttcccgaacatcactcggccatcctcgcgtgtctcggccagtggggtttacgcaccaac
actgagacggatgtcgtgcagggcattgaggcctgcgaagcctattacgagcagttggcc
gccaagcgtgatcagcttccctatgacatcgacggcattgtctacaaggtcgatagtatt
gagctgcaagcgcagctgggttttgtttcgcgggcgccgcgctgggccattgcccggaaa
ttccctgctcaggaagaggtaacgcgtttgctcgatgtcgagtttcaggtggggcgcacc
ggcgcgataacccctgtggcacgacttgagccggtgtttgttggcggtgttacggtgagt
aacgcgacactgcacaaccaggatgagatcgaacggctcggagcaatgattggcgatacc
gtcgttgtgcgccgggcaggggatgtgattccacaggtggtttccgtggtgaccgagcgt
cgcccggacgatgcggcggctatccgctttcccgatgcctgtccggtgtgtggttcggcg
gtagagcgcgaagcggacgaggcggtgctgcgatgcctgggcgggctggtgtgcgctgcc
cagcagaaagccgctattcggcatttcgcgtcgcgacgggcaatggatgtcgacggcctg
ggtgacaaattggtcgatcagatggttgacgagggtctggtggaaaatgtggcgggcctg
taccagctcacctttgatcaactggtggggctggagcgcatggggcagaaatctgccgac
aagctcctcaaagcgctcgagcagagcaagcaaacgaccttgccgcggtttattttcgcg
ctgggtatccgcgaggtaggcgaggccaccgcattgaatctggcgaatcatttcggctcc
tgggctgatctggtagccgccccggaagaagctctgttggaggtcgatgatgtggggccg
gtagtggccgaccacctgcgccagttttttgattctgaaggcagtatggcagtagcgaag
gcgctgttggacgccggggttgaatggccggccatcgaagtaaagagcgctgcagaattg
ccgtttgccggccagacctgggtggtgacgggcaagctcgaagcggtgggccgcaacgag
gcaaaaagcctgctgcagtctctgggtgccaaggtggctggcagtgtttccgctaaaacc
cattgtgttgtcgctggcccgggcgccggatcgaaactcgccaaggcctcggagcttggc
attgatgttattgatgaggaggcatttctcgctttgctagccaatcacggagtttcccca
tga
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