KEGG   Haematospirillum jordaniae: AY555_06050
Entry
AY555_06050       CDS       T04366                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hjo  Haematospirillum jordaniae
Pathway
hjo03030  DNA replication
hjo03410  Base excision repair
hjo03420  Nucleotide excision repair
hjo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AY555_06050
   03410 Base excision repair
    AY555_06050
   03420 Nucleotide excision repair
    AY555_06050
   03430 Mismatch repair
    AY555_06050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hjo03032]
    AY555_06050
   03400 DNA repair and recombination proteins [BR:hjo03400]
    AY555_06050
Enzymes [BR:hjo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AY555_06050
DNA replication proteins [BR:hjo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AY555_06050
DNA repair and recombination proteins [BR:hjo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AY555_06050
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AY555_06050
   MMR (mismatch excision repair)
    DNA ligase
     AY555_06050
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AY555_06050
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia 5_3_exonuc NAD_binding_10 PTCB-BRCT
Other DBs
NCBI-ProteinID: AMW34816
UniProt: A0A143DDR9
LinkDB
Position
complement(1285611..1287713)
AA seq 700 aa
MKEIATLSRQEAVAEIEALSIELQRHDTLYHRDDAPVISDADYDALKRRLLALEEQFPDL
RRLDSPSLRVGAPAATGFGKVRHKVPMLSLDNAFDAEETAEFVARARRFLSLPEDTILDI
LAEPKIDGLSFSARYEDGVFVRAATRGDGQEGEDITANLATVADLPARLKTSTPPRILEV
RGEVYMRRDDFAALNSRHSARGGKVFANPRNAAAGSLRQLDAKITASRPLRLFCYAWGEL
DGFTPETHKGWLDQLQAWGLPVNPEHHLCRTLEDVEHFAADIYARRADLPYDIDGLVLKV
NDVALQKRLGFVARAPRWAIARKFPSEQAQTRLRSIEIQVGRTGVLTPVAHLEPVTVGGV
VVSRATLHNEDEIRRLDVRVGDLVTLQRAGDVIPQILGVITGQRPADSTPFVFPHTCPEC
GATATREDGAVAWRCTGGLTCPTQATERLKHFVSRNAFDIEGLGGKHIEAFFADALIRTP
QDIFTLEARDRASLSKLKNRNGWGPASAEKLFDSINARRTITLDRFLFALGIPQVGQATA
RLLARHYGSLGTLLDTLDSIPGPDEEARLSEAWLTLIGIETIGPAVAQELLAFAREPHNR
DVLRALQAEITILPVEEPDTTHSAIAGKTIVFTGTLTRMGRAEAKAKALALGAKVAGSVS
AKTDLVVAGPGAGSKLKQAEALGVTIMDEDSFFDLVSNMT
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgaaagaaattgctaccctttcccgacaggaagctgtcgcggagatcgaagccctgtcg
atcgaactgcaacgacacgacaccctgtatcaccgcgatgacgccccggttatcagtgat
gcggattatgacgccctgaaacggcgtcttctggctttggaagaacaatttcccgatctg
cgccgtctcgacagcccgtcgctgcgggtcggggctccggctgcaacaggcttcggcaag
gtgcggcacaaagtccctatgctgtctctcgacaatgcttttgatgcagaggaaactgcc
gagttcgtggcccgggcgcgccgcttcctgtccctgcctgaagacaccatcctggatatc
ctagccgagcccaagatcgacgggctaagtttctctgcacgttacgaagatggcgttttc
gttcgtgccgcaacccgtggcgacggacaggaaggagaggacatcacagccaaccttgca
actgttgccgacttgccggcacggctgaagacatccaccccgccccgcattcttgaggtc
aggggcgaagtgtacatgcgccgcgatgattttgcggccctcaacagccggcatagtgcg
cgtggtggcaaggtctttgccaatccccgcaatgcggccgccgggtccctgcgtcagctg
gatgccaagatcacggcatcgcgtccattgcgcttgttctgctatgcgtggggtgagctt
gacggcttcacgccggaaacccacaagggctggctggaccagcttcaggcctgggggctt
cctgtcaatccggaacaccacctgtgccggacactggaagatgtagaacacttcgcagcc
gatatctacgcacggcgggccgatcttccctatgacatcgacgggctggtgctgaaagtc
aacgacgtcgcactacagaaacggctgggctttgttgcccgtgcaccccggtgggccatt
gcccgcaagtttccttcggaacaggcgcaaacacggctgcggtccattgaaatacaggtc
ggacggaccggggttctgactccggttgctcatctggagcctgtcacggttggcggcgtg
gttgtcagccgggcgaccctgcacaacgaagacgaaatccgccggctggatgtacgcgtc
ggcgacctagtcaccctgcagagagctggcgacgtgattccacagatccttggggttata
accgggcaacgccccgcagacagcaccccgtttgtgtttccccatacatgcccggaatgc
ggggccaccgccacccgcgaagacggcgccgttgcctggcgctgtacgggcggcctgacc
tgcccgacccaggcaaccgagcgtctgaaacactttgtttcccgcaatgcctttgatatc
gagggactgggcgggaaacatatcgaggcattctttgccgatgccctgatccgcacaccg
caggacattttcaccctggaagcacgcgacagggcaagtctgtccaaactgaagaaccgc
aacggctggggcccggccagtgccgagaagctgtttgattccatcaatgctcgccgcacc
attaccttggatcgtttcctgtttgctcttggcatcccacaggttggacaggctaccgcc
cgacttctggcccgtcattacggatctttgggcactctgctggataccctagactcaatc
cctggaccggatgaagaagcccgcctcagcgaagcatggctcaccctgatcggcatcgaa
accattggcccagccgttgcgcaggaacttctggcttttgcgcgggaaccccacaaccgc
gatgtgctacgggccctgcaggctgaaattaccattctgcctgtcgaggaaccggataca
acccactccgcgattgccggcaagaccattgtgttcacaggaaccctgacccggatggga
cgggctgaagccaaggccaaggccttggcactgggggcaaaggtcgcagggtcggtgtca
gcaaaaaccgatctggttgttgccgggccgggtgcgggatcaaaactgaagcaggccgag
gcgctgggagtcaccatcatggatgaggacagcttttttgaccttgtttccaacatgacc
tga

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