KEGG   Natrinema thermotolerans: DVR14_10275
Entry
DVR14_10275       CDS       T05948                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hjt  Natrinema thermotolerans
Pathway
hjt03030  DNA replication
hjt03410  Base excision repair
hjt03420  Nucleotide excision repair
hjt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hjt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DVR14_10275
   03410 Base excision repair
    DVR14_10275
   03420 Nucleotide excision repair
    DVR14_10275
   03430 Mismatch repair
    DVR14_10275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hjt03032]
    DVR14_10275
   03400 DNA repair and recombination proteins [BR:hjt03400]
    DVR14_10275
Enzymes [BR:hjt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DVR14_10275
DNA replication proteins [BR:hjt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DVR14_10275
DNA repair and recombination proteins [BR:hjt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DVR14_10275
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DVR14_10275
   MMR (mismatch excision repair)
    DNA ligase
     DVR14_10275
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DVR14_10275
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD RNA_ligase 5_3_exonuc RUBY_RBDX
Other DBs
NCBI-ProteinID: QCC58998
LinkDB
Position
complement(1717858..1719936)
AA seq 692 aa
MPAADEDEANPYLREPPTDFEPVEDLSEDEAREQVTLLREAVREHDRRYYVENDPIIGDR
TYDDLFSRLRDLEEAFGLDHPDSPTRRVGGEPIEAFDTVEHVAPMLSIEGSGEEGDIREF
DERVRREVGDVDYVCEPKFDGVSMEVVYEDGRLERAVTRGDGREGDDVTENARTIGSVPQ
RLRGDHPEFLAVRGEVYMPKDAFQAYNRERIERGEDPFANPRNATAGTIRQLDPTVVAER
PLAVFYFDVLEASDLADSHRDELERFPDYGLRTNDRVEVVGDIEDAIDYRDRMLEAREEL
DYEIDGVVIKVDDRAAREELGRTARHDRWAFAYKFPARAEVTTIADVAVQVGRTGRLTPV
ALLEPVDVGGVTVSRASLHNPEEIAEKNVNIGDTVRVQRAGDVIPYVEEVLEKGSEGHYE
LPDRCPVCDSPVERDGPMAFCTGGLGCDAQLRRSIEYYAGDDGLDLEGLGEKSVRQLVDA
GLLESVADLYALDQADLTDLEGWGEQSAENLLAEIAASREPPLSDFVSALGIPLVGPATA
RELAREFGTFAALREAAESEPERLEGVDDVGETVAETVHDFFTSEANAAVVDTVLDHVSP
QEVDVETGGDELAGLTFVFTGSLEGVTRDEAQATVEAHGANATGSVSGNTDYLVAGENPG
ATKQGDARDNDVPILEEGEFRDLLAERGIDLE
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgccagccgccgacgaggacgaggcgaacccctatctccgagagccgccaaccgacttc
gagccggtcgaggatctctccgaggacgaggcccgcgagcaggtcacactgctccgggag
gccgtccgcgaacacgaccgccgctactacgtcgagaacgacccgatcatcggcgaccgg
acctacgacgacctcttttcccggctgcgcgacctcgaggaggcgttcggtctcgaccac
cccgacagccccacccgcagggtcgggggcgaaccgatcgaagcgttcgacaccgtcgaa
cacgtcgcgccgatgctctcgatcgagggcagcggcgaggagggagacatacgcgagttc
gacgagcgggtgcgacgagaggtcggcgacgtcgactacgtctgcgagcccaagttcgac
ggcgtctccatggaggtcgtctacgaggacggccgcctcgagcgcgccgtgacccgcggg
gacggccgcgagggcgacgacgtgaccgaaaacgcgcgcacgatcggctccgtgccgcag
cggctccgcggcgatcaccccgagttcctcgcggtccggggcgaagtctacatgcccaag
gacgccttccaggcgtacaaccgcgaacgcatcgagcgcggcgaggaccccttcgccaac
ccgcggaacgcgaccgctggcacgatccgccagctcgatccgaccgtcgtcgccgagcgc
ccgctcgcggtcttttacttcgacgtcctcgaggccagcgacctcgcggacagccatcgg
gacgaactcgagcggttccccgactacgggctgcggaccaacgaccgcgtcgaggtcgtc
ggagacatcgaggacgcgatcgactaccgcgaccgcatgctcgaggctcgcgaggagttg
gactacgagatcgacggcgtcgtcatcaaggtcgacgaccgcgcggcccgcgaggaactg
gggcgaacggcccgtcacgaccgctgggccttcgcctacaagttccccgcccgcgcggaa
gtgacgacgatcgccgacgtggcggtccaggtcggccgaacgggccggctgactcccgtc
gccctgctcgagccggtcgacgtcggcggcgtcaccgtctcgcgggcgagcctgcacaac
cccgaggagatcgccgagaaaaacgtcaatatcggtgacacggttcgcgtccagcgggcc
ggcgacgtgatcccctacgtcgaggaggtcctcgagaagggcagcgagggccactacgaa
ctgcccgatcgctgtcccgtctgtgacagccccgtcgagcgcgacggccccatggccttc
tgtaccggtggattgggctgtgacgcccagcttcgtcggtcgatcgagtactacgcgggc
gacgacggcctcgacctcgagggactcggcgaaaagagcgtccgccaactggtcgacgcg
ggcctgctcgagtcggtcgcggacctctacgcactcgaccaggcggacctcaccgacctc
gagggctggggcgagcaaagcgccgagaacttgctcgccgagatcgcggccagccgcgag
ccgccgctttccgacttcgtctccgcgctcgggattcccctcgtcggtccggcgacggcc
cgcgaactcgcccgcgagttcggtaccttcgcggccctccgcgaggccgcggaaagcgag
cccgaacggctcgagggcgtcgacgacgtgggcgagaccgtcgccgagacggtccacgac
ttcttcacgagcgaggccaacgcggccgtggtcgacaccgtcctcgatcacgtctcaccg
caggaagtcgacgtcgagaccggcggggacgaactcgcggggctcaccttcgtcttcacc
ggctcgctcgagggcgtgactagggacgaagcccaagcaacggtcgaggcccacggggcc
aacgcgacgggcagcgtctcggggaacacggactacctcgtcgccggcgagaatccgggt
gcgacgaagcagggcgatgcgcgcgacaacgacgtcccgatcctcgaggagggcgagttc
cgggacctgctcgcggagagggggatcgacctcgagtga

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