Halosquirtibacter laminarini: K4L44_03535
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Entry
K4L44_03535 CDS
T10546
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hlam Halosquirtibacter laminarini
Pathway
hlam03030
DNA replication
hlam03410
Base excision repair
hlam03420
Nucleotide excision repair
hlam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hlam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K4L44_03535 (ligA)
03410 Base excision repair
K4L44_03535 (ligA)
03420 Nucleotide excision repair
K4L44_03535 (ligA)
03430 Mismatch repair
K4L44_03535 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hlam03032
]
K4L44_03535 (ligA)
03400 DNA repair and recombination proteins [BR:
hlam03400
]
K4L44_03535 (ligA)
Enzymes [BR:
hlam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K4L44_03535 (ligA)
DNA replication proteins [BR:
hlam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K4L44_03535 (ligA)
DNA repair and recombination proteins [BR:
hlam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K4L44_03535 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K4L44_03535 (ligA)
MMR (mismatch excision repair)
DNA ligase
K4L44_03535 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K4L44_03535 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_lig_T4_1
Auto_anti-p27
HHH_8
Zn_ribbon_PADR1
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QZE14922
LinkDB
All DBs
Position
complement(843725..846286)
Genome browser
AA seq
853 aa
AA seq
DB search
MASIEAKNKVEKLRSEIHKHNHNYYVLNQPTIDDYDFDMLLKELEKLESQYPELKDPNSP
TKRVGSDLNKEFIQKSHDYPMLSLSNTYNYTELYEFDQRIKKNIPEQFSYECELKFDGSS
ISLQYENGKLTQALTRGNGEVGDDVTQNVRTIKSIPLELQGDNYPDRFVIRGEILLPFKT
FDRLNTQRAAEGETRFANPRNAASGTLKLQNSSIVAKRSLDAYFYDLLTEAPLKDGHYET
LDQAKSWGFKISKENKKCNTIEEVIEYLEKWDKKRENLEVATDGVVIKVNSKTLQNRLGF
TAKSPRWAVAYKFKAEREITTLQSVSYQVGRTGAVTPVANLTPVSLAGTTVQRASLHNAD
IIENLDLHLQDQVYIEKGGEIIPKIVGVEYALRKEGAAPVLFPKSCPECHTPLERNEGEA
AYYCPNYLGCAPQIRGKIEHFVSRNAMNIEWLGKETIQLLYNQGLLNSVADIYRLPNRRD
KIEGLETIKRDDEKHPPLMVSYERIIYAFQFGIQGISLANAKKIANNISSLKELEDITVE
HIDSLSLTLKKGESSNHILRQILTFFRIPIQKQIFDTLCQGDMSNGNISLSAVIKALKIP
NITDQEIAEIMDHAPFAVLLPNITLDTWKSFLPEQKAVVAFNYIRNPRVDKLISRLNQLS
KISLKQKSVDNLFQAIEKSKSNTFHQLLFGLGIRFIGATAAKTLAKKFHSIESLRAASYQ
ELLDINDIGEKMANSIRRYFEKQENIDLIDSLTTLGAPVGTSIDGEQEASISELPSTLDG
LIFVISGNFGTSQRRKELGEIVEDHGGKLTSSISKKTNYLIAGDNIGPSKLEKAQALEIP
IINEEGFLAMLEQ
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaatagaagcaaagaataaagtagagaagttaagaagtgaaatacataaacac
aatcacaattattatgtattaaatcaacccactattgacgattatgatttcgacatgctc
ctaaaagagcttgaaaaattagaatctcaatatcctgaattgaaggatccgaactcccca
acaaagagagttggaagtgatcttaacaaagagtttatacagaagtcacacgactatcca
atgctctctctttctaacacatacaactatacggagctctatgaatttgaccaaagaatt
aagaagaatattccagaacagttctcctatgagtgtgaactaaaatttgatggctcctct
atcagcttacaatacgaaaatggaaagcttacccaagcattaacacgaggcaatggggag
gttggagatgatgtcacccaaaatgttagaacgatcaaatccattcctcttgagttacaa
ggcgacaactatccagatcgttttgtcatcagaggagagatattattaccattcaaaact
ttcgaccgcttaaatacacaacgtgcagctgaaggagagactcgtttcgcgaacccgagg
aatgcagcttcaggaacattgaagttacaaaactcctccattgtagccaaaaggtcgtta
gatgcatatttttatgatcttctgactgaagctcctcttaaagatgggcattacgaaaca
ttggatcaggcaaaatcatgggggtttaaaatttccaaagaaaataaaaagtgcaacacc
atagaggaggtaatagaatatcttgagaagtgggataaaaagagagaaaacttagaagtt
gccacagatggagtcgttatcaaagtgaactcgaaaacacttcaaaatagattaggcttt
acagccaagtctccacgttgggcagtagcttataaatttaaagcagaaagagagatcact
acccttcaatctgtatcatatcaggttggtcgaacaggtgcagttaccccggttgcaaac
cttacacctgtctcattagcaggaaccactgtacaacgtgcttcccttcacaatgcagac
attattgaaaatcttgatcttcatcttcaagatcaagtatatattgaaaaagggggagaa
attatacccaaaattgttggggttgaatatgctctaagaaaagaaggggcagcgccagta
ctattccctaaaagttgtccagagtgtcatactcctttggagagaaatgaaggagaggca
gcctattactgtccaaactatctaggctgtgcgccacaaataagaggtaagattgagcat
tttgtctctcgtaatgcgatgaatattgagtggctaggaaaggagaccattcaactacta
tataaccaaggacttttaaattcggttgcagacatctatcgcctaccgaatagacgagat
aaaattgaagggttagaaacaatcaaacgagatgatgaaaaacatcctccactgatggta
tcttacgaacgtatcatctatgcgttccaattcggtatccaaggtatctcactagccaat
gcaaaaaaaatagccaataatatctcttcgttgaaagagcttgaggacattacagtcgaa
catattgattccctatctctaaccttaaaaaaaggagagagctccaatcatatacttcgt
caaatcctaacatttttccgaataccaatacaaaaacaaattttcgacaccttgtgtcag
ggagacatgagtaatggaaatatatctctcagtgcagtgattaaggcgcttaaaatccca
aatatcacagaccaagagattgcagagattatggatcatgctccttttgcagtacttctg
ccaaacattacattggatacatggaagtcatttttacccgaacaaaaagccgttgtcgca
ttcaactatatacgcaaccctagagtagataagctcatctctagattgaatcaactatca
aagatctccttaaaacaaaaatctgttgacaatctttttcaagccatcgagaaatcgaaa
agcaatacttttcatcaactcctttttggtttggggatacgatttataggagcaacagct
gccaaaacacttgcaaagaaatttcactccattgaatccctgagagcagcaagctatcaa
gagcttctcgatataaatgatattggtgagaagatggcaaactccatccgtagatacttt
gagaaacaagagaatatagatctgatagatagtctcacaaccctaggtgctcctgttgga
acatctattgatggcgaacaagaagcttctatttcagaactcccttcgacacttgatggc
ctgatatttgttatatctggtaacttcggaacatcccaaagacgtaaagaacttggagag
atcgtggaagatcatggtggtaaactaacctcttctatatcgaaaaaaaccaattactta
attgcaggagataatattggaccttcaaagcttgaaaaagcacaagctttagagatccct
attattaatgaagagggttttcttgcgatgttagaacagtaa
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