Haloferax volcanii SVX82: SVXHx_2921
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Entry
SVXHx_2921 CDS
T08885
Symbol
liga
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03030
DNA replication
hln03410
Base excision repair
hln03420
Nucleotide excision repair
hln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVXHx_2921 (liga)
03410 Base excision repair
SVXHx_2921 (liga)
03420 Nucleotide excision repair
SVXHx_2921 (liga)
03430 Mismatch repair
SVXHx_2921 (liga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hln03032
]
SVXHx_2921 (liga)
03400 DNA repair and recombination proteins [BR:
hln03400
]
SVXHx_2921 (liga)
Enzymes [BR:
hln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SVXHx_2921 (liga)
DNA replication proteins [BR:
hln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SVXHx_2921 (liga)
DNA repair and recombination proteins [BR:
hln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SVXHx_2921 (liga)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SVXHx_2921 (liga)
MMR (mismatch excision repair)
DNA ligase
SVXHx_2921 (liga)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SVXHx_2921 (liga)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
DUF6317
RUBY_RBDX
DUF7575
Motif
Other DBs
NCBI-ProteinID:
WEL27195
LinkDB
All DBs
Position
2760466..2762565
Genome browser
AA seq
699 aa
AA seq
DB search
MSDADVDAESNPYLRDPPTEFEPAESLSREAAEEQAALLREAVREHDHRYYVAADPLVSD
AAYDALFSRLVALEGAFDLDTTNSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLRE
FDERVRREVGAVDYVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVP
LSLRGDHPDRLAVRGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVAD
RPLAVFFYDILDASARPDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDD
LDYEIDGTVIKVDSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTP
VAILDPVDVGGVTVSRATLHNPDERAALGVAVGDRVRVKRAGDVIPQVVEVTEDGGGSYE
FPDECPVCGSAVDRDGPLAFCSGGLSCPAQREASIGHFAVKGAMDIDGLGEERVAQLVDA
GLVETVADLYDLTADDLTELEGWGETSAENLVAAVENSTNPSLDSFLVGLSIPEVGEATA
RGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPDVGETVARRVRDFFENADNRAVIRA
LLDRGVDPEPVESGGDELDGLTFVVTGTLAASRSDVTELVESHGGNVTGSVSGNTDYLVV
GENPGRSKRDDAEANDVPTLAEAEFEALLAERGVAYPPE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccgacgtcgacgccgagtcgaacccgtacctccgcgacccgccgaccgag
ttcgaacccgccgagtcgctctcgcgcgaggcggccgaagagcaggccgcactcctccgc
gaggccgtccgcgagcacgaccaccgctactacgtcgcggccgacccgctcgtctccgac
gcggcctacgacgcgctgttctcccgactcgtcgcgctcgaaggcgcgttcgacctcgac
acgaccaacagcccgacgaaccgcgtcggcggcgagcccatcgacgcgctggagacggtc
gaacacgtcgcgcccatgctctctatcgaccagagcaccgacgccgacgacctccgcgag
ttcgacgagcgcgtccgccgcgaggtcggcgcggtcgattacgtctgcgaacccaagttc
gacggcctctcggtcgaagtcgtctacgaggacggcgagttcgtccgcgcggccacccgc
ggcgacggccggcgcggcgacgacgtgagcgcgcaggtgaagacgattccgaccgttccc
ctctccctccgcggcgaccaccccgaccgactcgccgtccgcggcgagatttacatgccg
aagtccgacttcagcgacctcaacgcccggcgcgtcgaagccggcgaggacgccttcgcc
aacccccggaacgcggccgccgggacgctccgcaacctcgacccctcggtcgtcgccgac
cgcccgctcgcggtgttcttctacgacatcctcgacgcgagcgcgcgacccgacagccag
tgggcggcgctcgaccgcctgcgcgagtggggtctccgcgtcaccgaccgcatcgagcgc
gccgaggacgtggcggaggccatcgactaccgcgaccggatgcaggcggcccgcgacgat
ctcgactacgaaatcgacggcacggtcatcaaggtggactcgcgggacgcccgcgagcgg
ttgggcgagaagagccgctcggtccgctgggcgttcgcctacaagttccccgcgcgccac
gaggtgacgaccgttcgcgacatcgtcgtgcaggtcgggcggacgggccggctcacgccg
gtcgccatcctcgaccccgtggacgtgggcggcgtcaccgtctcccgggcgacgctccac
aaccccgacgagagagccgccctcggcgtcgcggtcggtgaccgcgtccgcgtcaaacgc
gccggcgacgtgattccgcaggtggtcgaggtcaccgaagacggcggcgggagctacgag
ttccccgacgagtgccccgtctgcgggagcgccgtggaccgcgacggcccgcttgcgttc
tgctcgggcgggctgtcgtgtccggcccaacgggaggcctccatcggccacttcgcggtc
aagggcgcgatggacatcgacggcctcggcgaggagcgcgtcgcccaactcgtcgacgcc
ggcctcgtcgagacggtcgccgacctctacgacctgacggccgacgacctcaccgagttg
gaggggtggggcgagacgagcgccgagaacctcgtggccgccgtcgaaaactcgacgaac
ccctctctcgactcgtttctcgtcggcctgagcatccccgaggtgggcgaggcgaccgcc
cgcggcctcgcccgcgagttcgggtcaatcgaggcgttccccatcgaagccgacgccgaa
gaagacgagttcgacgcgttcgaggaacgcctgacgaccgtgcccgacgtgggcgagacg
gtggcgcgtcgcgtccgcgacttcttcgagaacgcggacaaccgcgccgtgattcgcgcg
ctgctcgaccgcggcgtcgaccccgaacccgtcgaatcgggcggcgacgaactcgacggc
ctgacgttcgtcgtgaccgggacgctcgcggcgagccgaagcgacgtgacggaactcgtc
gaatcccacggcggcaacgtcaccggctccgtctcgggcaacacggactacctcgtcgtc
ggggagaaccccggccggtcgaagcgcgacgacgccgaagcgaacgacgtgccgacgctc
gcggaagccgagttcgaggcgctgctcgcggagcgcggcgtggcgtatccgccggaatag
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