Humulus lupulus (common hop): 133782186
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Entry
133782186 CDS
T11341
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
133782186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133782186
Enzymes [BR:
hlp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133782186
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
133782186
BRITE hierarchy
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133782186
NCBI-ProteinID:
XP_062077386
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Position
6:complement(56781321..56830906)
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AA seq
1224 aa
AA seq
DB search
MAEETKFSVLCSLFNWMLKSKTSAKKRSKFRKFLDNFCKSGDYFSAVRLILPNLDRERGS
YGLKESVLATSLIDALGMARDSPDALRLINWRKGGAKTGASAGNFALVAVEVLERRQGMT
SGGLTIKELNELLDRLASSENRSEKTSVLAMLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLSDRSQRHKRQDIEVGKAVRPQLAMRVADATVAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHAMSDVIIQNVLADRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGFDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLRRIVKPLQGRLEFLVPNGGTHHPPGEPCWSRIAHNVDDIEKFFKETIENRDEGIVLK
DLGSKWEPCDRSGKWLKLKPDYVRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPAP
NTYPRRFISFCRVGTGLSDEELDAVVNKLKPYFRKYDYPKKAPPSFYHVTNNSKERPDVW
IDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRIRYDKPWHECLDIQSFIEIVQTG
NGTTHKGTDSGGVQQSKQAFTKPSTRKEKRNLSAVLSHLVRTDISGVKEDTLIFSGLMFY
FVNVPPTHSLDSFHKMIVENGGTFSMNLNSSVTHCVAAESKGFKYQAAKHQGDIVHYSWV
LDCCSQKKLIPLQPKYYLFLSDLSKKKLQEDIDEFSDTYYWDLDLADIKQLLSNVDGTQH
ARTTDHYKKKHWPSKWSCFHDCFIYFHASLHSLKPDWEVLLGLALRRLKVEVQMNGGRVI
DSLAQATHLVIFLVPGCPLDNEDVLKSFNAMEKRILRKGTLHIVESQWLEDSVASEQRLP
EETYSLKHILEYLNGENCKYDMDLDLDPVENQTFSFSSTKDEIDARDNDAPENTRVLTTL
DPSRKRGRPAGKSINKRKAGANQARRTRPRIGNKPAKISGNESDDSVSHEENIFKEEIKQ
MKEDDDEKSSHMNKAIAGLNQVRRTRARTGKRPAKISGNESDDDVSHKVNTVKEESKQME
QNHELLHKAERVEEPQSAVEQNKQGEESFRHKEWLNKVPEYEMIEKCSSEHIPHQKLEVL
TDPVHAMLLDMIPSLGKPKTATTTTNLRIEDDKRPMDVNAALTTTNLRIEDDKQLMDVNA
ALPPAEPKRKKVSYRDIASELLKD
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagaccaagttcagtgtcctctgcagtctcttcaactggatgctcaagagc
aaaacctccgccaagaagcgttccaagtttcggaaattcctagataacttctgcaagtcc
ggcgattactttagcgctgtacgactcatcctccccaatctggatcgcgagcgtggctcc
tatggcctcaaggaatctgttctggccacctccctcatcgatgccctcggcatggctagg
gactcccccgacgctcttcgcctcatcaattggcgcaaaggtggcgcaaagactggtgcc
agtgctggaaactttgcacttgttgccgtcgaagtactagagcgtaggcaaggaatgacg
tctggtggactaacaatcaaggagttaaatgagttgcttgatcgtttggcttcaagcgaa
aacaggtctgagaagacttcagtacttgctatgttgattaagaagacaaatgcacaagaa
atgaagtggatcatcatgatcattctaaaagatttgaagttagggatcagtgaaaaaagc
atatttcatgaattccatccagacgcagaggacttgtttaatgtcacctgtgacttgaaa
ttggtttgtgaaaagcttagtgatcgaagtcaacgccataagcggcaggatattgaagtt
ggaaaggcagtgcgtcctcaactagctatgagagttgctgatgcaactgttgcgtggaaa
aagcttcatgggaaggaagtggtcgtcgagtgcaaatttgatggtgatcgcatacaaatt
cataagaatggaacagaaatacactacttctcaagaaattttcttgatcactctgaatat
ggacatgcaatgtcagacgtcattatacaaaatgttctggctgataggtgtatactagat
ggtgaaatgttggtctgggacacatctttaaatcgctttgccgagtttggttcgaatcaa
gaaatagctaaggcagcaagggatgggtttgatagtgatcggcagttatgctatgttgca
tttgatatcctttatgttggcgatactagtgtaattcatcagagcttgaaggaacgacat
gagcttcttcgaaggattgtgaagcccttgcagggccgccttgaattcttagtacctaat
ggtggaactcatcatcctcctggtgaaccttgttggtcacgcattgctcataatgtggat
gatattgaaaagttttttaaggaaactattgaaaacagagatgaagggattgttctaaag
gatcttggctccaaatgggaaccttgtgatcggagtggaaaatggttgaaattgaagcct
gattatgttcgtgctggttctgatctggatgttcttattataggaggatattatggctct
ggacgtcgtggaggggaggtagctcaattcttggtcggccttgcagaacgtcctgcccca
aatacatatcccagacgatttatatcattctgcagagtgggtactggactctctgatgag
gagttagatgctgttgtaaacaagttgaagccttatttcaggaaatatgattacccaaag
aaagccccaccaagtttttatcatgtgacaaacaattccaaagaaagaccagacgtctgg
atcgacagccctgagaaatcaattatactttctattactagtgacatccgaactataagg
tctgaggtttttgcagcaccatacagcctgagatttccacgcattgacaggattagatac
gacaagccttggcatgaatgccttgatattcaatcatttatagagatagtacagacaggt
aatggtaccacacataagggtactgattctggcggagtgcaacagagtaaacaagctttc
acgaagccttctacaaggaaagagaaaaggaatctgtctgctgttctttctcatttagtt
cgtacagatatttctggtgttaaggaggacaccttaatattttcaggcttgatgttctac
tttgttaatgtgcctccaactcattcgttggactcctttcacaaaatgattgttgagaat
gggggcactttctccatgaatctgaacagttctgtcacacattgtgttgcagctgaaagc
aagggttttaaatatcaggcagcaaagcatcaaggggatattgttcattattcctgggta
ttggactgctgttctcaaaaaaagcttattcctctacagccaaagtattacctcttccta
tctgacttgtcaaagaagaaattacaagaagacattgatgaattttctgacacatactac
tgggatctagaccttgcggacatcaaacagctcttaagcaatgtggatggtacacaacat
gctagaactactgatcattacaagaaaaagcattggccatctaaatggtcctgctttcat
gattgcttcatctactttcatgcctctctacattctttgaaaccggattgggaagtcttg
ttaggtcttgcactacggcggttaaaggttgaggttcaaatgaatggggggagagttatt
gacagtcttgctcaggctacccatttggttatctttctggtcccaggctgtcctctagac
aatgaagatgtattgaaaagtttcaatgcaatggaaaaacgtattctccggaaggggaca
ttacatattgttgaatctcaatggttggaagactctgttgcaagtgagcaaagattgcca
gaagaaacatatagcttaaagcatatcttggagtatttgaatggtgaaaattgcaaatat
gacatggatctggacttggaccctgtggagaaccagactttctcattttcctcgacaaaa
gatgaaattgatgcaagggacaatgatgccccagaaaacaccagagtcttgacaacactt
gatcctagtaggaaacgaggaagacctgctgggaaaagcataaataaaagaaaagcaggg
gctaaccaagctcgaagaacacgaccacgcattggaaataaacctgctaaaatatctggc
aatgaatcagatgatagtgtttctcatgaagaaaacatattcaaagaagagatcaaacaa
atgaaggaagatgatgatgagaaaagttcacatatgaataaagcaatagctggactcaat
caagttcgaagaacacgggcacggactggaaaaaggcccgcaaaaatatctggcaatgaa
tcagatgatgatgtttctcacaaggtaaacacagtcaaagaggagagcaaacaaatggag
caaaatcatgagctgcttcataaagccgagagggtagaagaacctcaatcagcagttgaa
cagaataagcaaggtgaagaaagttttagacataaagagtggctcaacaaagttcctgaa
tatgaaatgatcgagaagtgtagtagcgaacacattccgcaccagaagctggaagttctg
actgatcctgttcatgccatgttgttggacatgattccaagtctcggaaagccgaaaacg
gcaacgactactactaatttaaggattgaagatgataagcggccaatggacgtaaatgca
gcactgactactactaatttaaggattgaagatgataagcagctgatggacgtaaatgca
gcactgccaccggcagagcctaaaagaaagaaagttagctacagggatattgctagtgag
ctgctcaaggattga
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integrated database retrieval system
