Humulus lupulus (common hop): 133782428
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Entry
133782428 CDS
T11341
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133782428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133782428
Spliceosome [BR:
hlp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133782428
Complex C
U5 SnRNP specific factors
133782428
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
EF-G_D2
Roc
Septin
SOI
Motif
Other DBs
NCBI-GeneID:
133782428
NCBI-ProteinID:
XP_062077718
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All DBs
Position
1:complement(3256575..3263888)
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AA seq
986 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDGDGDEDLPDRPGEDAAVSDGEDAAAASNGWLTASND
IDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDDQPLEQPIIKPVRNIKFEVGVKDSS
TYVSTQFLVGLMSNPTLVRNVALVGHLQHGKTVFMDMLIEQTHHMSTFDSHSEKHTRYTD
TRIDEQERRISIKAVPMTLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADSAVLIV
DAAEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPRDAYFKLRHTLEVINNLI
SSASSTAGDVQIIDPTAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWGD
FYYHPDSRAFKRKPPSGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNAA
YKLNVRPLLRLACSSVFGSASGFTDMLVRHTPSPREAATRKVDHVYTGPKDSLIYKAMTE
CDPLGPLMVNVTKLYPKSDCSVFDAFGRVYSGTVQTGQTVRVLGEGYSPDDEEDMTVKEV
TKLWVYQARDRIPIAEAPPGSWVLIEGVDASIMKTATLCSEYYDEDVYIFRPLQFNTLPV
VKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLREL
YSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENSVVSL
DWPRKDIGNFFQTRYEWDVLAARSIWAFGPDKQGPNILLDDTLSTEVDKGLLNAVKDSIV
QGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGSGQVIPTARRVAYSSFLMATPRL
MEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTSDVPQPGTPSYIVKAFLPVIESFGFETDL
RYHTQGQAFSLSAFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDV
SINKFFDEAMMVELAQQAADLHLQMI
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtctctatgatgagtttggaaactatataggacctgagattgaatctgac
caagagagtgatggggatggtgatgaagatcttccggataggcctggggaagatgcagca
gtgtcagatggtgaagatgcagctgctgcttccaatgggtggttaactgcctccaatgat
attgatatggataatcaaattgtccttgctgaggacaagaagtactatcctacagcagaa
gaggtttatggtgaagatgttgagacattggttatggatgaggacgaccaaccccttgaa
caaccaattatcaaacctgttaggaatatcaaatttgaagttggggtgaaggattcttca
acttatgtgtcaacgcaattccttgttggtctaatgtcgaaccccactcttgtacggaat
gtagcacttgtggggcatttgcagcatgggaagactgtcttcatggatatgttgatcgag
caaactcaccatatgtcgacatttgattcacatagtgagaaacatacaagatacacggat
acaagaattgatgagcaagagagaaggatatcaatcaaagcagttccaatgactcttgtt
cttgaggatagcaattccaaatcgtacctctgcaatatcatggatactcctggtcacgtg
aatttctctgatgaaatgactgctgccttgaggcttgccgatagtgctgtcttgattgtg
gatgctgcagaaggagtcatggtaaatacagagagggctatacgtcatgcaatccaagat
cgcctgcctattgtagttgtaattaacaaggttgacaggttgattacagaacttaaactg
ccaccaagggatgcttattttaagttaaggcatactctagaagtaatcaataatctcata
tcttctgcgtcgtccaccgctggtgatgtccaaatcattgatccaactgctggaaatgtt
tgctttgcaagtgctactgctggatggtcattcactctacaatcgtttgctaaattatat
gtgaaactccatggaatcccttttgatgctgataagtttgcttctcgcctttggggtgat
ttttactatcatccagattcaagggctttcaagagaaaacctccaagtgggggagaaaga
tcttttgtccagtttgtgctcgaacccctttacaagatatacagccaagtgattggagaa
cataaaaagagtgttgaggcaactcttgccgagcttggtgtcactcttagcaatgcagct
tacaaattaaatgttagacctttgctgaggctggcatgtagctcggtttttggttcagcc
tcaggcttcactgacatgctggttcgccatactccttcacctagggaggctgcaactaga
aaggttgatcatgtatacactggacctaaagattctttaatctacaaggctatgacagag
tgtgatcctcttggtccattaatggtaaatgtgacaaaactatatcccaagtccgactgt
agtgtatttgatgcttttggtagggtttatagtggcacagttcagactggacagactgtt
cgtgtattaggtgaaggctattcaccagatgacgaagaagacatgacagttaaagaggtg
acaaaattatgggtttatcaagctcgagataggatacctatagctgaggctcctcctggt
tcttgggttctcattgaaggagtggatgcttcaatcatgaaaactgccactctctgtagt
gagtattatgatgaagatgtttacatctttcgacctttgcaattcaatacccttccggta
gtgaaaacggcaactgagccattgaaccctagtgaattgccaaagatggttgagggtcta
agaaaaatcagcaagagctatcctcttgccattactaaagttgaggaatctggagagcac
acaattttgggtacaggtgaactgtacttggattctattatgaaggatctaagagaactc
tattcagaagttgaagtcaaggtggcagatcctgttgtatcattctgtgaaacagtggtg
gaatcttcgtctatgaaatgttttgctgaaacacccaacaaaaagaataaaataaccatg
attgcagagccactggagaggggactcgcagaggacatagagaacagtgttgtaagcctt
gattggcctcggaaggatattggtaacttttttcaaacaagatacgaatgggatgtgctt
gctgcacggtccatctgggcatttggtcctgataagcaggggcctaatatcctgttggac
gacacactttcaactgaagtcgacaagggtttgctaaatgcggtcaaggattccattgtc
caaggatttcagtggggtgctcgagaaggacctctctgtgatgagcctattagaaatgta
aagttcaagattgttgatgcaaaaattgcccctgagccattgcatcggggatctggtcag
gtcattcccacagctagacgtgttgcttattcatcgtttcttatggcgaccccacgactt
atggaacctgtatattatgtggagattcaaacaccaattgactgtgtctctgcaatttac
acggttttatctcgaagacgtggacatgttacatctgatgttcctcaaccagggacccca
tcttatattgtcaaggcatttttacctgtgatagaatcgtttggttttgagacggacttg
agatatcatacccaaggacaagcattctctctatcggcttttgatcactgggctatagtt
cctggggatccccttgacaagagtattgtcctgcggccacttgaacctgctcctatccag
caccttgctcgtgagtttatggtgaagacaaggcgtcgaaagggaatgagcgaggacgtg
agcatcaacaaattcttcgacgaggcgatgatggtggaactggcccagcaggcagctgat
ctacaccttcaaatgatatga
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