Humulus lupulus (common hop): 133834508
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Entry
133834508 CDS
T11341
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
hlp Humulus lupulus (common hop)
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hlp03036
]
133834508
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133834508
Chromosome and associated proteins [BR:
hlp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
133834508
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
133834508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
KxDL
Motif
Other DBs
NCBI-GeneID:
133834508
NCBI-ProteinID:
XP_062120130
LinkDB
All DBs
Position
5:13435385..13448065
Genome browser
AA seq
1579 aa
AA seq
DB search
MEPETLYQKGKKRMLSEINDGGSNSIVKIYRFKILLPNGTTIGLNLRECGPKMPLDEFVS
LVKDEYSRVVQRSKSMQCKRRINWNAGSLFLQDANDAKMTSIVDFKNFKPHKCHILILHD
GSSKVAETFENMWDLTPDTDLLKEVPESYTFETALADLIDNSLQAVWSNSKNNQRLVSVD
VLEDRISIFDTGIGMDGSDENSIAKWGKMGASLNRSEKEQAIGGKPPYLMPYFGMFGYGG
AFASMHLGRHALVSSKTKGSKKVYTLRLEREALLSCSGSEFKWTTAGSLRDPLEDELART
RHGSFTKVEIFEPNIKTRDLLQLQCRLKDIYFPYIQCDELSNSGKTITPIKFQVNGTDLA
EIEGGEVAITNLHSSNGPDFVLQVHFSFKQDSKTKSPGSRSYQEANARLKCAYFPVVKGK
ENIERILEKLKGEGHEVSEKYENFSRVAIRRLGRLIPDARWAWLPFMDLRHKKGSAAQIL
KRCCLRVKCFIDADAGINPTPSKTDLAHHSPFTTALRNFGNNLRENEKGIDVRVYRDGKL
MSSSQLERDYQEWILQMHGQYDEEVDHGEDEPVLVLTPSPAKGKKIGISSDVSRLNKVIK
RKEKTWEAGQKIKILKGACAGVHKNNVYATIEYFLFRGLQGDAGGDGQIVCRPLGTPDKD
GCVLSEVDGMMSVNMNSSLSLPISVIDFEKCLPVENAEWNNQMDKLLQKFPSTIDLLSPK
ECEELEVGVEELPCTATAGKVPPKEVVAVVRPGNYVSKGDSRVLEQRYIFKSNIEMLLEV
KFIGEEKDPQKHEHVLSKRVSPSSNHGVHGIYVFPLRCKLKHPHLFQKAGVYKFSFSLID
SSCERLVKSVKVKASSEIGKWAILRDKQSQSFSVSVGSTLRPFSIACYDIYGNRTPLRSN
PEVVVQLQGNKDSVSHVKKIESGLSISEGKLKIQGLLIESSDLDKIRPDYEATLVISSSD
HKFSVPIPCHVTPGCLQLVKAQQAILANQLLPGCIVKELELEMLDAYGNHVMEGSEVQVD
VQGFQMLDHLGPRRKVDSDGCVDLSGLLKVTAGYGENVSFSVSSKNKVFFKQEFQIERRE
LRIASKVPEILTTGSILENIIFEIVNSEGIVDETIHHEEKTGLSHMLTIKADWLDMEEST
RYTFKHGRCVVPAILLSKTEGTICFSAFHSRHSSLSVNVKVHMIKPAIPTPNLEHNKVSS
THALLLQDPSSINQVGVNYIMSIENKKKALEEKICKTGLAIQVVEEQCAKLNKKKEEVEQ
TIKELQDSTESHSLGFLNHLSTKEEVMEDIEKISNSAAAILCNISRVVPFQEPENHLMKD
IIGVVALLGRVQYSQLSRILSEYLGVDQMLAVVTRSFESAAHLEMYTHTGEVDRSNALHA
EAAILGKSINGRFTVMCLDNISPYRGGFEDHPQGKLALPLPCFIDGTIPKGFLGFAVNMI
DLDEDQLSITNNSGNGLRETVFYRLLGQLQVYQTREDMLAASACIKHGAVSLDGGILKEN
GVMSFGFSDPGVCFQVVTTNNEMALSQENLKLLQDQKSELKTIDDKIKQNAKHHGQVLNY
YEKTKKKLSKLMDDVERNL
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaaacgctgtaccagaaaggaaagaaaaggatgttgagtgaaatcaatgat
ggtgggagtaatagtatagttaaaatatataggttcaaaattcttttaccaaatggaaca
accattggtttgaatttgagagaatgtggtccaaaaatgcctctagacgagtttgttagt
ttggtgaaagatgaatattctcgagttgtgcaacgttccaaatcaatgcaatgtaaaaga
cgtatcaactggaatgctggttctttatttctgcaagatgcaaatgatgccaagatgaca
agcattgtggatttcaagaatttcaagccacataaatgccacattttaatacttcacgat
ggttccagcaaagttgctgaaacttttgagaatatgtgggatttgacgcctgatactgac
ttgttaaaggaggtaccagaatcgtacacatttgagactgctcttgcagatttaattgac
aattctctgcaagcagtatggtcaaacagtaaaaataatcaaagacttgtaagtgtggat
gttttagaagataggatttcaatctttgacactggcataggtatggatggcagcgatgaa
aattctatagcaaaatggggaaaaatgggtgcctcacttaaccggtctgaaaaagaacag
gctattgggggcaaacctccatatctaatgccttattttggcatgtttgggtatggagga
gcttttgcctccatgcatttagggagacatgctttagtgtcttcaaaaacaaagggttca
aagaaggtatatactttacgtcttgagagagaggcgttgctcagctgttctggctctgag
tttaaatggacgactgcgggcagcctaagggatcctttagaggatgagcttgcaagaaca
agacatggaagctttacaaaggttgaaatttttgaaccaaatataaagactagggactta
ttacaacttcagtgcaggctgaaggacatatatttcccatatattcagtgcgatgagttg
tctaactcagggaagacaattacaccgataaaatttcaggttaatggcactgatttagct
gagattgaaggtggggaagttgccattacaaacttgcattcgagcaatggtcctgatttt
gttttacaggttcatttctccttcaagcaagacagtaaaaccaagagtccaggttcaagg
tcatatcaagaagccaatgcacggctaaaatgtgcttattttcctgttgttaagggaaaa
gagaatattgagaggattttggagaaattaaaaggcgaaggacatgaagtctctgaaaag
tatgaaaactttagtcgtgttgctattcggcggcttggccgtctcattccagatgctcgt
tgggcgtggctgccattcatggacttgaggcataaaaagggaagtgcagcacagatattg
aagaggtgttgtttaagagtcaaatgctttattgatgctgatgctggtatcaatccaact
ccatccaagactgatctagctcaccacagtccgtttactactgctctaaggaattttggc
aataatcttcgtgagaatgagaaagggatagacgtcagagtctatagagatgggaagtta
atgagttcttcgcaactagagagagattatcaggaatggattcttcagatgcatgggcag
tatgatgaagaggttgatcacggcgaagatgaacctgtactagttctaaccccaagccca
gcaaaaggaaagaaaattggcatctcctctgatgtttcaaggcttaacaaagttattaag
aggaaggagaaaacttgggaagctggccaaaagataaaaattttgaagggagcatgtgct
ggtgttcataaaaataatgtctatgcaacaatagaatattttttatttagaggtctccaa
ggggatgcaggtggggatggtcagattgtttgcaggccacttggtacaccagataaggat
gggtgcgttctttctgaagttgatgggatgatgagtgttaatatgaatagctccttgtct
ttacctattagtgtaattgatttcgaaaagtgcttacctgttgaaaatgctgaatggaat
aaccagatggataagcttcttcagaaatttccatctacaattgacttgcttagtccaaaa
gaatgtgaagaattagaggttggggtagaggaattgccttgtactgctactgctgggaaa
gttcctcccaaggaagttgtagcagttgttcggcctggaaattatgtatctaaaggtgat
tctagagttctggagcagagatatatattcaaatctaatatagaaatgctgttggaagta
aagttcattggcgaagagaaagatcctcaaaaacatgaacacgttttatcgaagcgggtc
tctccttcttcaaatcatggagtacatggtatatacgtctttccactaaggtgcaagctg
aagcacccacatttgtttcaaaaagctggggtctacaaattttcattttctcttattgat
tcaagttgtgagaggcttgtcaaaagtgttaaagtcaaggcatcttctgagatcgggaag
tgggcaattttaagagataaacagagccaatcatttagtgtgagtgttggttcaactttg
agacctttctccattgcatgttatgatatctatggcaatagaactcctcttcgatcaaat
cctgaagttgtggtccagctccaaggaaataaggactcagtttctcatgttaaaaaaatt
gagagtggcctttcaatttcagaagggaagctaaaaattcagggcttgctaattgaaagc
agtgacttggacaagatcagacctgattatgaagccactctagtcatatctagctcagat
cataaattctcagttcccataccttgccatgtaactccaggttgtttacaacttgttaag
gcccaacaagcaattttggctaaccaacttttgccgggatgcattgttaaagagcttgaa
ttagagatgttggatgcatacggtaatcatgttatggaaggctctgaagttcaggtggat
gtacagggatttcagatgctagatcacctaggccccaggcgtaaggtggattctgatgga
tgtgtcgaccttagtggtctcttgaaagtaacagccggttatggagagaatgtatcattc
tctgtatcatcaaagaataaagtgtttttcaaacaagagtttcagattgagagacgggaa
ctaagaattgcatcgaaggtacctgagattcttaccactggttccatactggaaaacatc
atttttgaaattgtcaactctgagggtattgttgatgaaactatccaccatgaagaaaaa
actggtctatcacatatgcttacaattaaggctgattggcttgatatggaggagtccacc
cgatatactttcaagcatgggcgatgtgttgttcctgctatacttttatctaaaactgag
gggaccatttgtttctcagctttccactctcgtcattcaagccttagtgtgaatgttaag
gttcatatgatcaaacccgcgataccaactccaaatttggagcataataaggtttcatct
actcatgcattgcttcttcaggacccaagttcaattaatcaagttggtgtaaactatatc
atgtccattgagaataaaaaaaaggcccttgaagagaagatatgtaaaactggtttggca
atccaagtagtggaagaacaatgtgctaagttaaacaaaaagaaggaagaagttgagcaa
actataaaagaattgcaagattccactgaatcacattcgttgggattcttaaatcatttg
tccacgaaagaggaagtaatggaggatatagaaaagatcagtaactctgctgctgccatt
ctttgcaatatttcgagggtagttccattccaagagccagagaatcatttaatgaaagac
ataataggggtggttgctttacttggtagagttcaatatagccagcttagcaggatattg
tcagaatatttgggtgtagatcaaatgctagctgttgtcaccagatcttttgaatctgct
gctcatcttgaaatgtatacacatactggtgaagttgatcgcagcaatgctcttcatgct
gaagcagccattcttgggaaatccataaatggtcgatttactgttatgtgccttgacaat
ataagtccatacagaggtggctttgaagatcaccctcaggggaagctggctttaccactt
ccttgttttattgatggaaccattccaaaaggttttctgggatttgccgtaaatatgatt
gatttagatgaagatcagctatccataacaaacaattcaggcaatggtcttagagagacg
gtattctatcgccttcttggtcagctccaagtttaccaaaccagggaagacatgctagca
gccagtgcttgtataaaacatggcgctgtatcactagatggtggaatcttgaaagaaaat
ggtgtaatgtcttttggatttagtgaccccggagtatgttttcaagttgtcacgacaaac
aatgagatggctctttctcaagaaaatttgaagctgctccaagaccagaaatcagaattg
aaaaccatcgatgataagataaaacaaaatgccaaacatcatgggcaagttttaaactat
tatgaaaagacaaagaaaaagttaagcaagttgatggacgatgtggaacggaacctataa
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