Haloferax larsenii: KU306_04585
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Entry
KU306_04585 CDS
T08379
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hls
Haloferax larsenii
Pathway
hls03030
DNA replication
hls03410
Base excision repair
hls03420
Nucleotide excision repair
hls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KU306_04585 (ligA)
03410 Base excision repair
KU306_04585 (ligA)
03420 Nucleotide excision repair
KU306_04585 (ligA)
03430 Mismatch repair
KU306_04585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hls03032
]
KU306_04585 (ligA)
03400 DNA repair and recombination proteins [BR:
hls03400
]
KU306_04585 (ligA)
Enzymes [BR:
hls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KU306_04585 (ligA)
DNA replication proteins [BR:
hls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KU306_04585 (ligA)
DNA repair and recombination proteins [BR:
hls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KU306_04585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KU306_04585 (ligA)
MMR (mismatch excision repair)
DNA ligase
KU306_04585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KU306_04585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UVE51164
LinkDB
All DBs
Position
888493..890631
Genome browser
AA seq
712 aa
AA seq
DB search
MADTDVESNPYLRDPPTEFEPAEELPREEAEAQASLLRDAIREHDHRYYVEAEPLISDAA
YDALFSRLLALEGTFDLDTTDSPTSRVGGEPIEALETVEHVAPMLSIDQSTDAEDLREFD
QRVRREVGDVAYVCEPKFDGLSVEVVYEYGQFVRAATRGDGQRGDDVSAQVKTIPTVPLR
LRGDYPETLAVRGEVYMPKPAFNDLNRRRVEAGDDPFANPRNAAAGTIRNLDPSVVADRP
MAVFFYDILDASETPDSQWESLDHLRDWGLRVADELDRVEDVDGAIDYRDRMLEARDDLD
YEIDGTVIKVDSRAAREELGEKSRSVRWAFAYKFPARHEVTTIRDIVVQVGRTGRLTPVA
LLDPVDVGGVTVSRATLHNPDEIDSLGVAVGDRVRVKRAGDVIPQVVEVVEADEQQSSAR
RTDSGESASGHYEFPDECPVCGSPVDRDGPLAFCSGGLSCPAQREASIGHFAIKAAMDID
GLGEERVAQLVDAGLVESVADLYDLTVEELVELEGWGETSARNLVEAIEESNEPSLDSFL
VGLSIPEVGEATARALAREFGSIDEFPIGEDVPESRFDEFEARLTTVPDIGETVAHRVRD
FFENEDNRAVIRSLLDHGVEPESVESGGDELADLTLVVTGALAVSRGDVRELVEAHGGNV
TGSVSGNTDYLVVGENPGQSKRDDADERGVPTLDEDEFAALLAERGIEYPPA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaccgacgtcgagtcgaacccgtatctccgcgacccgccgacggagttcgaa
cccgccgaagaactcccacgagaggaggcagaagcgcaagcgtcactcctccgagacgcc
atccgcgaacacgaccaccggtactacgtcgaggccgaaccgctcatctctgacgccgcc
tacgacgccctcttttctcgactgctcgcgctcgaagggacgttcgacctcgacacgacc
gacagcccgacgagtcgtgtcggcggcgagccaatcgaagcgctggagacggtcgaacac
gtcgcaccgatgctctctatcgaccagagcaccgacgccgaggacttacgtgagttcgac
cagcgcgtccgtcgcgaggttggcgacgtggcctacgtctgcgaaccgaagttcgacggc
ctctcggtcgaagtcgtctacgaatacgggcagttcgtccgcgccgccacccgcggcgat
ggccaacgcggagacgacgtgagcgcgcaggtgaagacgattccgacggttccgctccgt
cttcggggcgactaccccgagacactcgccgttcggggcgaagtgtacatgcccaaaccg
gcgttcaacgacctgaatcgccgccgcgtcgaggcgggcgatgaccccttcgccaacccc
cgaaacgccgccgccgggacgattcgaaacctcgacccgagcgtcgtcgccgaccgcccg
atggcggtgttcttctacgacatcctcgacgcgagcgagacgcccgactcgcagtgggag
tcgctcgaccacctccgagactggggcctccgcgtcgccgacgaactcgaccgcgtcgag
gacgtggacggagcaatcgactaccgcgaccgcatgctggaggcccgcgacgacctcgac
tacgaaatcgacgggaccgtcatcaaggtcgattcacgggcggcccgcgaggagttgggt
gagaaaagcaggtcggtccgctgggccttcgcctacaaattcccggcccgtcacgaggtg
acgacgattcgggacatcgtcgtgcaggtcggccgaacgggacgcctgacgcccgtcgcc
ctcctcgacccggtggacgtgggcggcgtgaccgtctcgcgggcgactctccacaacccg
gacgaaatcgactctctcggcgtcgccgtcggggaccgcgtccgcgtcaagcgcgctggc
gacgtgattccacaagtcgtcgaggtggtcgaagccgacgagcaacagtcgtcggcccgc
cggacagactccggcgaaagcgccagcggacactacgagttcccggacgagtgccccgtc
tgtggaagtcccgtcgaccgcgacggcccgctggcgttctgttccggcggtctctcctgt
cccgcacagcgcgaggcgtcaatcggccacttcgccatcaaggccgcgatggacatcgac
ggcctcggcgaagagcgcgtggcgcaactcgtcgacgccggactcgtcgaatcagtggcc
gacctctacgacctcacggtcgaggagttggtcgagttagagggctggggcgagacgagc
gcccggaacctcgtcgaggccatcgaagagtcgaacgagccatcgctcgattcgttcctc
gtcggtctgagcatccccgaagtcggcgaagcgaccgcccgcgcgctcgcccgcgagttc
gggtcgatagacgagttccccatcggtgaggacgttccggagtcccggttcgacgagttc
gaagcgcggctgacgaccgtccccgacatcggagagacggtcgctcaccgcgtccgcgac
ttcttcgagaacgaggacaaccgcgccgtgattcgctcgcttctcgaccacggcgtcgaa
cccgagtctgtcgagtccggcggcgacgaactcgccgacctcaccctcgtcgtgacgggg
gcgctcgccgtgagccgaggcgacgtccgcgaactcgtcgaagcccacggcggcaacgtg
actggctccgtctccggcaacaccgactacctcgtcgtcggcgagaatccggggcagtcg
aagcgggacgacgccgacgagcgcggggtgccgacgctcgacgaagacgagttcgcggcg
ttgttggcggaacgcggtatcgagtatccgccggcgtaa
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