Halosimplex litoreum: I7X12_13570
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Entry
I7X12_13570 CDS
T06959
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hlt
Halosimplex litoreum
Pathway
hlt03030
DNA replication
hlt03410
Base excision repair
hlt03420
Nucleotide excision repair
hlt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I7X12_13570 (ligA)
03410 Base excision repair
I7X12_13570 (ligA)
03420 Nucleotide excision repair
I7X12_13570 (ligA)
03430 Mismatch repair
I7X12_13570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hlt03032
]
I7X12_13570 (ligA)
03400 DNA repair and recombination proteins [BR:
hlt03400
]
I7X12_13570 (ligA)
Enzymes [BR:
hlt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I7X12_13570 (ligA)
DNA replication proteins [BR:
hlt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I7X12_13570 (ligA)
DNA repair and recombination proteins [BR:
hlt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I7X12_13570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I7X12_13570 (ligA)
MMR (mismatch excision repair)
DNA ligase
I7X12_13570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I7X12_13570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QPV61774
UniProt:
A0A7T3FW02
LinkDB
All DBs
Position
2744832..2746925
Genome browser
AA seq
697 aa
AA seq
DB search
MTDDAADIPADNPYLAEPSTDFDPVEALTGTDAEAQAERLREAIRYHDQRYYVENDPAID
DRRYDALFSRLRDLEERFDVQTPDSPTRRVGGAPRDELPDVEHVAPMRSIDQGGEAEDAR
EFDRRVREGLDSADWDGEIEYYCEPKFDGLSVEVVYEDGVFERAATRGDGQVGDDVTENV
RTIPSVPQRLRGDYPEFLAVRGEVYMPKPAFQDYNRELVERGDDPFANPRNAAAGTLRQL
DPSVTAERPLSVFFFDVLDGVEFDTRWEMHETLPEWGLRTCDRTELVDDIEAAVDYRDAR
LDERDDLDYEIDGVVVSVNDTDACDELGTTSRAPRWAFAYKFPARSEHTTVRDVVVQVGR
TGRLTPVALMDPVEVGGVTVSRASLHNPAEIERLGVDVGDGVRVRRAGDVIPEVAEVTDA
DGEGHFAFPDECPVCGSAVERDGPMAFCSGGLGCPGQRERSVQHYASRTGLDIEGVGEER
VQQLLDAGLVDDVADLYELTVDDLTDLEGWGETSAENLVAELDDAREPPLADFLTAVGIP
EVGETVAASLARYFGTFDAVREAGEDDLQAVSDVGPTVAAEIRDFFDSEANRDVLDRLLA
HVDPQEAETSTGDALAGLTFVFTGSLDGYTRSDAQDLVERAGGSATSSVSGNTDFLVTGE
NPGQTKRDDAAEHDVPILDGVEAFESKLREYGVEAAD
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgacgcggccgacatacccgcggacaacccctatctcgccgagccctcgacc
gacttcgacccggtcgaggccctcactggaaccgacgcggaagcccaggccgagcggctc
cgcgaggcgatccgctatcacgaccagcgctactacgtcgagaacgaccccgccatcgac
gaccggaggtacgacgcgctgttctcgcgactgcgcgacctcgaagagcggttcgacgtg
cagaccccggacagcccgacccggcgcgtcggtggcgccccccgcgacgaactgccggac
gtcgagcacgtcgcaccgatgcgctctatcgaccagggcggcgaagccgaagacgcccgc
gagttcgaccgccgcgtccgcgaggggctcgactccgcggactgggacggggagatcgag
tactactgcgagccgaagttcgacggtctctcggtcgaggtggtctacgaggacggcgtc
ttcgagcgcgcggcgacccgcggcgacggccaggtgggggacgacgtgaccgagaacgtc
cgcaccatcccgagcgtccctcagcgcctgcgcggcgactaccccgagttcctcgcggtc
cggggcgaggtgtacatgccaaagcccgccttccaggactacaaccgcgaactcgtcgaa
cgcggcgacgaccccttcgccaacccccgcaacgccgccgccggcacgctccgccagctc
gacccctccgtcaccgccgagcgcccgctctccgtgttcttcttcgacgtcctcgacggg
gtcgagttcgacacccgctgggagatgcacgagactctccccgagtgggggctgcggacc
tgcgatcggaccgaactcgtcgacgatatcgaggcggccgtcgactaccgcgacgcccga
ctagacgaacgggacgacctggactacgagatcgacggcgtcgtcgtctccgtgaacgac
accgacgcctgcgacgaactgggcaccacttcgcgggcgccccgctgggccttcgcctac
aagttccccgcccgcagcgagcacacgacggtccgggacgtggtcgttcaggtcggccga
accggacggttgacccccgtcgcgctgatggaccccgtcgaggtcggcggcgtcacggtc
tcgcgggcctccctgcacaaccccgcggagatcgagcgcctcggcgtcgacgtgggcgac
ggggtgcgcgtccgccgcgcgggcgacgtgatccccgaggtcgccgaggtgaccgacgcc
gacggggagggccacttcgcgttccccgacgagtgcccggtctgcgggagcgccgtcgag
cgcgacgggccgatggccttctgttccggtggactgggctgtcccggtcagcgcgagcgg
tcggtccagcactacgcctcccgcacgggactcgatatcgagggcgtcggcgaggagcgc
gtccagcagctgctcgacgccggcctggtcgacgacgtggcagacctctacgaactgacc
gtcgacgacctcaccgacctggaagggtggggcgagaccagcgccgagaacctggtcgcc
gaactcgacgacgcccgcgaaccgccgctcgccgacttcctcaccgccgtcggcattccg
gaggtcggcgagaccgtcgcggcctcgctcgcacggtacttcggcaccttcgacgccgtc
cgcgaggcaggcgaggacgacctgcaggccgtctccgacgttgggccgaccgtcgccgcc
gagatccgggacttcttcgacagcgaggccaaccgggacgtgctggaccggttgctcgcc
cacgtcgacccccaggaggccgagacttcgaccggcgacgctttagcggggctgaccttc
gtcttcaccggctcgctcgacggctacacccgcagcgacgcccaggacctggtcgagcgg
gccggcggctcggcgaccagcagcgtctcgggcaacacggacttcctcgtgaccggcgag
aaccccgggcagaccaagcgcgacgacgccgccgagcacgacgtgccgatcctcgacggc
gtcgaggcgttcgagtcgaaactgcgtgagtacggcgtcgaggcagcggactga
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