Halobacterium litoreum: LT972_13865
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Entry
LT972_13865 CDS
T07867
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hlu
Halobacterium litoreum
Pathway
hlu03030
DNA replication
hlu03410
Base excision repair
hlu03420
Nucleotide excision repair
hlu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LT972_13865 (ligA)
03410 Base excision repair
LT972_13865 (ligA)
03420 Nucleotide excision repair
LT972_13865 (ligA)
03430 Mismatch repair
LT972_13865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hlu03032
]
LT972_13865 (ligA)
03400 DNA repair and recombination proteins [BR:
hlu03400
]
LT972_13865 (ligA)
Enzymes [BR:
hlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LT972_13865 (ligA)
DNA replication proteins [BR:
hlu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LT972_13865 (ligA)
DNA repair and recombination proteins [BR:
hlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LT972_13865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LT972_13865 (ligA)
MMR (mismatch excision repair)
DNA ligase
LT972_13865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LT972_13865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
HHH
BRCT
Nlig-Ia
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
UHH13230
LinkDB
All DBs
Position
2533793..2535922
Genome browser
AA seq
709 aa
AA seq
DB search
MPDAEEDAPEDNPYVRDPDTDFVPAADLDAEAAAAEAERLREAIRYHDYRYYVANDPVIG
DRAYDALFSRLQELEDAFDVATEDSPTRRVGGEPLDELDSVDHVAPLLSIDSSGDEADVR
DFVARVEREVGDARFVCEPKFDGLSVEVVYEDGEYVRAATRGDGETGEDVTENVRTIESV
PQRLRGDPPAFLVVRGEVYIPRDAFQAYNAERVERGDDAFANPRNAAAGTLRQLDPSVTA
ERPLDCFFYDVLAAGESRDAVEPDASRGGLDAGIDTHWAEHEALPTWGLKVNDRAERVET
ADEIVAYRNDLGAEREDLNYEIDGVVVKVDDRRQCVELGVTARHYRWAYAYKFPARSEVT
TISDVVVQVGRTGRLTPVALLEPVEVGGVTVSRASLHNPEEIAEMGVGVGDEVRVQRAGD
VIPYVEEVVASHSEGHFEFPDACPRCGSDVEFDGPMAYCTGGLACPAQLVRSVGYFASVL
DVEGIGEQAAEQFVDSGLVEHDVADLYDRSVDEIAELEGWGETSAQNLKAELDAARHPPL
GKFLASIGIPEVGPTVARDVAAEFGTLDAVLDASEADFRAVDGVGDVVARHLREFLDNDR
NRRVIERLRDESRLGEPEPVESTDGDALDGLTFVFTGSVEDWTRGDLQALVGRHGANATS
SVSGNTDYLVVGANPGQSKREDADANDVPQISPAEFFELLAERGVDPTR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgccgaggaggacgcccccgaggacaacccctacgtccgcgacccggacacc
gacttcgtgccggccgcggacctcgacgccgaggcggccgccgccgaggccgaacgcctc
agggaggcgattcgctaccacgactaccggtactacgtcgcgaacgaccccgtcatcggg
gaccgagcgtacgacgcgctgttctcgcgcctgcaggagttggaggacgccttcgacgta
gcgaccgaggacagccctacccgccgggtgggcggcgaaccgctcgacgaactcgattcc
gtcgaccacgtcgcgcctctgctctccatcgactccagcggcgacgaggccgacgtgcgg
gacttcgtcgcgcgcgtcgaacgcgaggtcggcgacgcccgattcgtctgcgaaccgaag
ttcgacggcctctccgtcgaagtcgtctacgaggacggcgagtacgtccgcgccgccacc
cgcggcgacggcgagacgggcgaggacgtgaccgagaacgtccgcaccatcgagagcgtc
ccccagcgcctgcggggcgacccgcccgcgttcctcgtcgtgcgcggcgaagtctacatc
ccccgtgacgcgttccaggcgtacaacgccgagcgcgtggagcgcggcgacgacgcgttc
gccaacccccggaacgccgccgcgggcacgctccgccaactcgacccgagtgtcaccgcc
gagcgcccgctcgactgtttcttctacgatgtgttggctgcaggtgagtcccgcgacgcg
gtcgaaccggacgcctcgcggggcggcctcgacgccggcatcgacacgcactgggccgaa
cacgaggcgctcccgacgtgggggctgaaagtcaacgaccgcgccgagcgcgtggagacg
gcggacgaaatcgtggcgtaccggaacgacctcggcgcggagcgagaggacctgaactac
gaaatcgacggcgtcgtcgtgaaagtcgacgaccgccggcagtgcgtcgaactcggcgtg
acggcccgacactaccggtgggcgtacgcctacaagttcccggcgcgctcggaggtgacg
accatctcggacgtggtcgtgcaggtcgggcggacgggccgcctgacgccggtcgcgctc
ctcgaacccgtcgaagtcggcggcgtgacggtgtcgcgggcgagcctccacaaccccgag
gagatagccgagatgggcgtcggcgtcggcgacgaggtgcgcgtccagcgcgccggcgac
gtgattccgtacgtcgaggaagtcgtcgcgtcccactccgaggggcacttcgagttcccg
gatgcgtgcccgcgctgcgggagcgacgtggagttcgacggaccgatggcgtactgcacg
ggcggcctcgcgtgccccgcccaactcgtgcggtcggtcggctacttcgcgagcgtgctg
gacgtggagggcatcggcgagcaggccgccgagcagttcgtcgactcggggctggtcgaa
cacgacgtggcggacctctacgaccggtcggtcgacgagatagcggaactagaggggtgg
ggcgagacgagcgcgcagaacctgaaagccgaactggacgccgcgcgccacccgccgctc
gggaagttcctcgcgtccatcggcatccccgaggtcggaccgaccgtcgcgcgcgacgtg
gccgccgagttcgggacgctggacgcggtgctggacgccagcgaggccgacttccgcgcc
gtcgacggcgtcggcgacgtggtcgcacgccaccttcgggagttcctcgataacgaccgg
aaccgccgcgtcatcgagcgcctgcgcgacgagtcccgactcggcgaacccgaaccggtc
gaatccaccgacggcgacgcgctcgacggcctgacgttcgtgttcaccgggagcgtcgag
gactggacgcgcggcgacctgcaggccctcgtggggcgccacggcgcgaacgccacgtcg
tcggtctccgggaacaccgactacctcgtcgtcggcgccaatccgggccagtcgaagcgc
gaggacgccgacgccaacgacgttccacagatttcgcccgcggagttcttcgagttgctc
gccgagcgcggcgtcgacccaacgcggtga
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integrated database retrieval system
