Hydrogenovibrio marinus: HVMH_1242
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Entry
HVMH_1242 CDS
T06677
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03030
DNA replication
hmar03410
Base excision repair
hmar03420
Nucleotide excision repair
hmar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HVMH_1242 (ligA)
03410 Base excision repair
HVMH_1242 (ligA)
03420 Nucleotide excision repair
HVMH_1242 (ligA)
03430 Mismatch repair
HVMH_1242 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmar03032
]
HVMH_1242 (ligA)
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_1242 (ligA)
Enzymes [BR:
hmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HVMH_1242 (ligA)
DNA replication proteins [BR:
hmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HVMH_1242 (ligA)
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HVMH_1242 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HVMH_1242 (ligA)
MMR (mismatch excision repair)
DNA ligase
HVMH_1242 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HVMH_1242 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
BBN59648
LinkDB
All DBs
Position
complement(1332129..1334159)
Genome browser
AA seq
676 aa
AA seq
DB search
MTLNAACQSLECYNDLVTELNHHSYQYYVLDAPQISDGQYDVLYQKLLKTEAENPDWIAT
DSPSQRVGDQPLSHFESVTHRVAMYSLDNAFDDDDMQEFYQRIAERYPEQSLMFSAEPKM
DGLAINLRYEEGVFVQATTRGDGKVGEDVTQNVKTIQSIPLKLSGANFPTTLEVRGEVFM
SKSTFEKLNQQQLDKGDKPFANPRNAAAGTLRQLDSKIVAQRHLSFYVYGWGEVSEGWAI
PELYSEMIAFFGEWGLPLNPNATVVEGVEGMAGYYEKMLQLRPSLPYEIDGIVYKLNAIQ
LQQQLGFTARAPRWAIARKFPAEEVWTELLAIDVQVGRTGAITPVARLKPVNVGGVIVSN
ATLHNMDEIQRKDVHIGDTVIVRRAGDVIPEVVGPVLSKRPDNTKLFSMPHYCPECGSEI
VKELDKAVYLCTGGLFCPAQRKRALEHFVSRKAMDIQGLGTKLINQLVDEKLVNHPDNLY
AMDVETLAGLERMATKSAQNVVDSIQDSKSTTFGRFIYSLGIPEVGEVTAESLARHFKNY
EALSSATLEDLIEVNDVGEVVASHLVHFFQQPHNQEVIQGLFNAGVHWPEPKDIVVQEDS
PFAGKVIVITGTLESMGRTGAKKLLEAAGAKVTGSISASTDFLLAGEKAGSKLAKAESLG
ITVLSEQQWLEMMPES
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgactttaaatgctgcctgccaatcacttgagtgttataacgatctcgttactgaactc
aatcatcacagctatcaatattatgttttagatgcccctcagattagtgatgggcaatat
gatgtgctttaccaaaagctactaaaaactgaagcggaaaacccagattggattgctaca
gattctccttctcaacgagttggcgatcagcctctgagccattttgaatcagttacccac
cgtgttgcgatgtactcgttggataatgcatttgacgatgacgatatgcaggagttttac
caacgaattgctgaacgctatcctgaacaaagtttaatgttttctgctgagcccaaaatg
gatggtttggctatcaacctccgctatgaagagggtgtgtttgtccaagctacaacaaga
ggcgatggcaaggtaggtgaagatgttactcaaaacgttaaaaccatccagtcaattcca
ttaaagcttagcggtgcgaatttcccgacgactttggaggtccgtggtgaagttttcatg
tccaagtcgacttttgaaaagttgaatcaacaacaattagacaaaggtgacaaaccgttt
gcgaaccctagaaatgctgctgcagggacgttacgccaactagattcaaagatcgttgcg
cagcgacacctgagcttttatgtctacggttggggtgaggtttcagaaggttgggctata
cccgaattatacagtgagatgattgcattttttggtgagtgggggcttcctttaaatccc
aatgcgactgttgttgagggcgttgagggaatggctggctactatgaaaaaatgctacag
ctgagaccttccttgccttatgaaattgacggcattgtctataaactgaatgccatacag
ttgcagcagcaacttggctttaccgccagagcgcctagatgggccatagccagaaaattt
ccagcggaagaagtctggactgaattgttggcgatagatgttcaagtgggtcgcaccggc
gccattacccctgtggcaaggcttaaacctgttaatgttggcggtgtaatagtttcaaat
gccacactgcataatatggatgaaatacagcgaaaggatgttcatataggtgacactgtt
attgtgcgccgtgcgggtgatgtcattccagaagtagttggtccagtgttatctaaaaga
cccgataatacaaaactcttttcaatgccacattattgccctgagtgcggttcagagatt
gttaaagagcttgataaggccgtttacctgtgcactggaggactattttgtcctgcacaa
cgaaaacgggctcttgagcattttgtttcaaggaaagcaatggacattcagggcttggga
acgaagctcatcaaccagttggtcgatgaaaaactggtcaatcaccctgataacctttat
gccatggatgttgaaacattagctggtcttgaacgtatggcgacaaagtctgcacagaat
gttgtggattcaatacaggattccaagtcaacaaccttcggtaggtttatttacagtttg
gggattcctgaagttggagaagtcacggctgaaagtttggcaagacacttcaaaaactat
gaagccttgtcgtcggcgacactggaagatctcattgaagtgaatgacgttggagaagtg
gttgcgagccatttggttcattttttccagcagccacataaccaagaagtgatacaaggt
ttgttcaacgcaggggtgcactggccggaacctaaagatatagtcgttcaggaagacagt
ccttttgcaggtaaagtcattgtcattaccggtaccttggaatccatgggaagaacgggt
gccaaaaaactgctggaagcggcaggagcaaaagtcacaggaagtatctcagccagtacg
gattttttgttggcgggtgagaaggctggctctaagttggcaaaagccgaatcacttggt
ataactgtgctaagtgaacagcaatggcttgaaatgatgccggaaagttaa
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