Hyphomicrobium sp. MC1: HYPMC_0346
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Entry
HYPMC_0346 CDS
T01557
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03030
DNA replication
hmc03410
Base excision repair
hmc03420
Nucleotide excision repair
hmc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYPMC_0346 (ligA)
03410 Base excision repair
HYPMC_0346 (ligA)
03420 Nucleotide excision repair
HYPMC_0346 (ligA)
03430 Mismatch repair
HYPMC_0346 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmc03032
]
HYPMC_0346 (ligA)
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_0346 (ligA)
Enzymes [BR:
hmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYPMC_0346 (ligA)
DNA replication proteins [BR:
hmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYPMC_0346 (ligA)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYPMC_0346 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYPMC_0346 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYPMC_0346 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYPMC_0346 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
CCB63580
UniProt:
F8J8K6
LinkDB
All DBs
Position
338031..340172
Genome browser
AA seq
713 aa
AA seq
DB search
MSDAKSRKKRKTVSAASAGSETPADEIARLSAEIAHHDQLYYRQDAPEISDAEYDALRRR
LGDLEKEHPELRREDSPTVKVGAAPVAAFGKIRHDVPMLSLGNAFDDQDVIDFVERVRRF
LMLGEDDTLEVTAEPKIDGLSISIRYEHGELVQAATRGDGAEGENVTANIKTVREIPHKL
KGKDIPELIDIRGEIYLGHKDFEALNAAQAESGDKIFANPRNAAAGSLRQLDASITAKRP
LRFFAYAWGAVSELPADTQAGVVKAFAHWGLPVNPLMRIATTTDELLAFYRNIEAKRASL
GYDIDGVVYKVNRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPV
AKLKPVTVGGVVVSNATLHNEDEIARKDIREGDTIIVQRAGDVIPQVVEVVLAKRPSHLH
PFKFPTVCPVCGSHAVREAVEETGKADVVRRCTGGLICPAQVKERLKHFVSRNAFDIEGL
GTEKIEFFFDTGRIKSPADIFTLEARDKASDEPLLKVRGFKETSVRKLFAAIDARREVPL
DRFLFALGIRHIGETTAKDLAKAYGTLDALRSAVDAAVEGGKGSDAYQDIDNIEGIGETV
VDALVDFFGEDHNQEQIAALLKEVTVTPFVRTQTKESPVTGKTVVFTGTLTKLTRNEAKA
QAERLGAKVSGSVSKKTDYVVAGTEAGSKLDNARALGVTVLDEDEWLALIGQA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgccaaatcaagaaagaagcgcaagaccgtctcagcggcgtcagcgggaagc
gagacgcctgccgacgagattgcccggctgtcagccgaaatcgcgcatcacgatcagctc
tattaccggcaggacgcaccggagatttccgacgccgaatatgatgcgctgcgtcgccgg
cttggtgatcttgagaaagaacatcccgagcttcggcgtgaagacagcccaacggtgaag
gtcggtgcggcgccggttgcggcgttcggcaagattcgccacgacgtaccgatgctgtcg
ctgggcaatgcgttcgacgatcaggacgtcatcgatttcgtcgagcgggtgcgccgtttt
ctcatgctcggcgaagacgacacactcgaagtgacggctgagccaaagatcgacgggctt
tcgatttcgatccgctatgagcatggcgagttggtgcaggccgcgacgcgcggcgatggg
gcggaaggcgagaacgttacggccaacatcaagacagttcgcgagattccgcataagctc
aagggcaaggacattcccgagctgatcgacattcgcggcgagatctatctcggccacaaa
gacttcgaagcgttgaatgccgcgcaggctgaaagcggcgataagatctttgccaacccg
cgcaacgccgctgccggttcgcttcggcagctcgatgcgtcgatcacggcgaagcgcccg
ctacgttttttcgcgtatgcgtggggtgcggtttcggaacttccggcggacacgcaagcg
ggtgtcgtcaaagcgttcgcgcattggggattgccggtcaatccactgatgcggatcgcg
acgacgacggatgaactgctggcgttctatcgcaatatcgaagcaaagcgtgcctcgctc
ggctacgatattgacggtgtcgtctacaaggtgaataggctcgattaccaggaacggttg
gggtttgtgtcgcgctcgccgcgttgggcgattgcgcacaagttcgccgcggagcaggcg
acgaccgttcttgaaaaaattgatattcaagtggggcgcacgggcgcgctgacgccggtt
gcaaagttgaagcccgtgacggtcggcggtgtcgtcgtgtcgaacgcgacgctgcacaac
gaagatgagattgcgcgcaaagatattcgcgaaggcgatacaatcatcgtgcagcgggcg
ggtgatgtcattcctcaggtcgtcgaagtggtgctggcgaagcgcccctcgcacttgcat
ccattcaagttcccgaccgtttgcccggtgtgcggcagtcatgcggtgcgagaggcagtc
gaggaaacgggcaaggcggacgtcgtgcgccgttgcacgggcggtctcatttgtccggcg
caggtcaaagagcgtctgaagcatttcgtgtcgcgcaatgccttcgatattgagggattg
ggcacggagaagatcgagtttttcttcgatacggggcggatcaaatcgcctgcggatatt
ttcacgctggaagcccgcgataaggcgtcggacgaaccgctgctgaaagtccgcggtttc
aaggaaacgtcggtccgcaagctgtttgccgccatcgacgcgcgccgcgaggttccgctc
gatcgatttttattcgcactcggcattcggcacattggggagacgaccgcgaaagacctc
gcaaaagcctacggaacgctggacgcgctgcgttcggctgtcgatgcggcggtcgagggc
ggaaaaggcagcgacgcctatcaggatatcgacaatatcgaaggcatcggcgagacggtg
gtcgatgcactcgtcgatttcttcggcgaggatcacaaccaggaacagattgcagcgctg
ctgaaggaagtgaccgttacaccttttgtgcgtacgcaaacgaaagagtcgcctgtcacc
ggcaagacggttgtcttcacgggaacgctgacgaagctgacgcgcaacgaagcgaaggcg
caggccgagcgtcttggcgcgaaggtttcaggctcggtttcgaagaagacggattacgtc
gttgcgggaacggaagcgggctcgaagcttgataatgcacgggctctgggcgttaccgtg
ctcgatgaagacgagtggcttgcgctgattgggcaggcgtga
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