Vreelandella aquamarina SCSIO 43005: CTT34_03905
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Entry
CTT34_03905 CDS
T06424
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03030
DNA replication
hmd03410
Base excision repair
hmd03420
Nucleotide excision repair
hmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTT34_03905 (ligA)
03410 Base excision repair
CTT34_03905 (ligA)
03420 Nucleotide excision repair
CTT34_03905 (ligA)
03430 Mismatch repair
CTT34_03905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmd03032
]
CTT34_03905 (ligA)
03400 DNA repair and recombination proteins [BR:
hmd03400
]
CTT34_03905 (ligA)
Enzymes [BR:
hmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTT34_03905 (ligA)
DNA replication proteins [BR:
hmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTT34_03905 (ligA)
DNA repair and recombination proteins [BR:
hmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTT34_03905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTT34_03905 (ligA)
MMR (mismatch excision repair)
DNA ligase
CTT34_03905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTT34_03905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_pol_A_CTD
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QHD48893
UniProt:
A0A857GI17
LinkDB
All DBs
Position
796667..798703
Genome browser
AA seq
678 aa
AA seq
DB search
MSQPDPTLLEEISQLRADLDDANHRYYVLDEPTLTDADYDRKLQRLTQLESDHPELISPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDIAAFAERVAERLECQASEIEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGKSVPELLEVRGEVI
MRHAGFEALNERAREEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQAARLEPDLG
DATHSALMARLSTLGFRTSAELTTLFGPDAVADYCEQLGEKRDQLGYDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLAPVTVAGVTVSN
ATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDEEKRPADARAITFPDHCPVCGSDI
ERLEGEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIEQLVDQEWVKTPADLF
HLSVDQLKSLPRMGEKSATNLVNALEKAKQTTLARFIYALGIREVGEATAANVANHFGTL
QALQDAELAALEAVNDVGPVVAAHIHTFFRQPHNLETLQALIDAGLIWQEAEVTQGPTPL
EGQTWVLTGAMDSMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQLGVE
VIDEATFIERLAAWEQSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgaccccaccttgctggaagagatcagccaactgcgtgccgatctcgat
gacgccaatcaccgctattacgtcctggacgagccgacgttaaccgacgctgactacgac
cgtaagctgcagcgcttgacgcagttggagagcgatcatcccgagctgatttccccggat
tcgcccactcagcgagtcggtgccgccccggcagaaggtttccccgaagtggcccacgcc
attcccatgctgtcgttggataacgcctttagccgtgacgacatagcggcctttgccgag
cgcgtcgcggagcgtttggagtgccaagccagcgagatcgagtttagctgcgagccgaaa
ttggatggcgcagcggtatcgttggtgtatgagcagggcgtgttggttagcggtgcaacc
cgtggggatggccgtacgggggagggcattacctccaacctgcgtaccctgcgctcggtg
ccgcttaagctcatgggtaaaagcgtgcctgagctgttggaagtgcgcggtgaagtgatt
atgcgccacgctggctttgaagcactcaatgagcgcgctagagaagagggcagcaaagtc
tttgccaacccgcgcaacgccgccgctggcagcctgcgtcagctcgacccgcgcattacg
gcgacccgtccgttggagttccacgcctaccaagcagcacgcttggagcccgacttgggc
gatgccacccacagtgcgctgatggcccgtttatccactctaggctttcgcaccagcgcg
gaactgacgactctgttcggcccggacgcggtggccgattactgcgaacagctcggtgaa
aagcgcgaccaactcgggtatgacatcgatggcgtggtgatcaaggtcaacgacctgcgc
caccagcgggaactgggcttcgttgcccgcgcgccgcgctgggcggtggcgttcaaattc
cccgctcaggaggaagtcaccaccctcaacgatgtggagtttcaggtcggccgcaccggg
gccatcacgccggtcgcccggctggcgccggttaccgtcgcgggggtgacggtttctaac
gccacgttgcacaacgccgatgagattacccgcctgggcgtgatgataggcgatacggta
gcgattcgccgcgcgggcgatgtcatcccccaagtggtgcgcgtggacgaggagaagcgc
ccggcggatgcccgcgcgattactttccccgatcactgccccgtgtgcggttcggacatc
gagcgtctcgagggcgaagccgtggcccgctgctccggagggctttactgcgccgcccag
cgcaaagaggcgctaaaacactttgccagccggaaagcgctggatatcgacggcctgggc
gagaagctgattgaacagttagtggatcaggagtgggtgaaaacccctgccgatctattt
catctcagcgtcgatcagttgaagagcctgccgcgcatgggcgaaaagtccgccaccaac
ttggtcaacgcgctggaaaaggccaagcagaccacgctagcgcggttcatctacgcgctg
ggcatccgtgaggtgggcgaagccacggcggccaatgtggccaaccacttcggtacgctg
caagcgttacaagatgccgaactggctgcgctggaggcggtcaatgacgtaggccccgtc
gtggcggcgcatatccacaccttcttccgccagccccataacctggaaacgctgcaagcg
ttgatcgacgcaggcttgatctggcaagaggccgaggtgacgcaaggtccaacgccgctg
gagggccaaacctgggtgctgaccggggcgatggacagcatgacccgcgacgagggcaag
gcgcggcttcaggcgctgggggccaaagtagcgggcagcgtatcgaaaaaaaccacttgc
ctagtggcgggtgaagccgccggcagcaagctcactaaagccgagcagttgggggtcgag
gtgatcgacgaagccacgttcatcgagcgtttagccgcctgggagcagagcgaatga
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