Haloferax mediterranei: HFX_0852
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Entry
HFX_0852 CDS
T02129
Symbol
nthD
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hme
Haloferax mediterranei
Pathway
hme03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HFX_0852 (nthD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_0852 (nthD)
Enzymes [BR:
hme01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HFX_0852 (nthD)
DNA repair and recombination proteins [BR:
hme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HFX_0852 (nthD)
Prokaryotic type
HFX_0852 (nthD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
EndIII_4Fe-2S
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AFK18573
UniProt:
I3R2W3
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All DBs
Position
complement(808048..808854)
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AA seq
268 aa
AA seq
DB search
MPEEPSENISGGPSGGGQDMAFEPAEPATATRAEVVVDRLGERYWRKAYGGQGGFECLVR
TILSQNTSDKASQPAHDTLMARYGGDDLAESLAAADREGIIDAIRSGGLYNQKSKLIQGV
AEEVLADFGSEDDFDRYVREADPSTVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPVDTH
VHRIARRLGVAPADADHEGVRAALEREVPAEKCGFGHTAMIQFGREFCKARKPVCLDGKD
ECPMADVCEKVGVDVAGQSVVDPAAADD
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaagagccgtccgaaaacatcagcggcggtcccagcggcggcggccaagacatg
gcgttcgagcctgccgaaccggcgaccgcgacccgcgccgaagtggttgtcgaccgactc
ggagaacgctactggcggaaagcctacggcggccaaggtggcttcgagtgtctcgtccgg
actatcctcagccagaacacgagcgacaaggctagccagcccgcccacgacacgttgatg
gcgcgctacggcggcgacgacctcgcggagtcactcgccgcggccgaccgagagggaatc
atcgacgccatccggtcgggcggcctctacaaccagaaatcgaagctcatccaaggtgtc
gccgaggaggtactggccgacttcggaagcgaagatgatttcgaccgctacgtccgcgag
gccgacccctcaaccgtccgcgaccgcctcctggagatgaagggtgtcggccccaagacc
gccgactgcgtgcttctcttcgcgggcgggcgcgggggtgtgtttccggtagatacgcac
gtccaccgaatcgcccgccgactcggagtcgctcctgccgacgccgaccacgaaggcgtc
cgtgcggcgctcgaacgcgaggtgcccgccgagaagtgcggcttcggccatacggcgatg
attcagttcggacgggagttctgcaaggcgagaaaaccggtttgtctcgacggaaaagac
gagtgtccgatggcagacgtgtgcgagaaagtcggcgtcgacgtagcgggccaatcagtc
gtcgacccggccgccgcggacgactaa
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