Hylobates moloch (silvery gibbon): 116477778
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Entry
116477778 CDS
T08803
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hmh
Hylobates moloch (silvery gibbon)
Pathway
hmh03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hmh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116477778 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hmh03000
]
116477778 (KDM2B)
04121 Ubiquitin system [BR:
hmh04121
]
116477778 (KDM2B)
03036 Chromosome and associated proteins [BR:
hmh03036
]
116477778 (KDM2B)
Enzymes [BR:
hmh01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
116477778 (KDM2B)
Transcription factors [BR:
hmh03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
116477778 (KDM2B)
Ubiquitin system [BR:
hmh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
116477778 (KDM2B)
Chromosome and associated proteins [BR:
hmh03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
116477778 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
116477778 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_4
PHD
LRR_At1g61320_AtMIF1
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
116477778
NCBI-ProteinID:
XP_032024357
LinkDB
All DBs
Position
Unknown
AA seq
776 aa
AA seq
DB search
MAMSVSAEDDDYESEPDQNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGK
FNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYA
SNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGLLRRKSDDVHL
RKKRKYEKPQELSGRKRASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGK
EDKLFRKKRRSWKNAEDRMALANKPIRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPS
TEGAEGPEEKKKVKMRRKRRLPNKELSRELSKELNHEIQRTENSLANENQQPIKSEPESE
GEEPKRPPGICERPHRFSKGLNGTPRELRHQLGPSLRSPPRVISRPPPSVSPPKCMQMER
HVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKR
LWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCS
WIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRL
AGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNK
VTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtccgtgagcgccgaggacgacgactatgaatcggagccggaccagaaccgg
gctgtgggtcggcccaaggggaagctgggcccggcctccgcggtgaagttggccgccaac
cggacaacggcaggagctcggcggcgccggacgcgatgccgcaagtgcgaggcctgcctg
cggaccgagtgcggagagtgccacttctgcaaggacatgaagaagttcgggggccccggg
cgcatgaagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccccacactgcc
gtgtgccttgtgtgtggcgaggcggggaaggaagacacggtggaagaggaggaaggcaag
tttaacctcatgctcatggagtgctccatctgcaacgaaatcatccaccctggatgcctt
aagattaaggagtcagagggtgtggtcaacgacgagcttccaaactgctgggagtgtccg
aagtgtaaccacgccggcaagaccgggaaacaaaagcgtggccctggctttaagtacgcc
tccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaaggaaggg
caggagcctgccaagcggaggagcgagtgtgaggaggcgccccggcgcaggtcggatgag
caccccaagaaggtgccgccggacggcctcctgcgcagaaagtctgatgacgtgcacctg
aggaagaagcggaaatacgagaagccccaggagctgagtggacgcaagcgggcctcatcg
cttcaaacgtcccccggttcctcctctcacctctcgccgaggccccctctaggcagcagc
ctcagcccctggtggagatccagtctcacttacttccagcagcagctcaaacctggcaaa
gaagataagcttttcaggaaaaagcggcggtcctggaagaacgccgaggaccgcatggcg
ctggccaacaagcccatcaggcgcttcaagcaggaacccgaggacgatctgcccgaagcg
ccccccaagaccagggagagcgaccactcccgctccagctcccccaccgcgggacccagc
accgaaggggccgagggcccggaggagaagaagaaggtgaagatgcgccggaagcggcgg
cttcccaacaaggagctgagcagggagctgagcaaggagctcaaccacgagatccagagg
acggagaacagcctggccaacgagaaccagcagcccatcaagtcggagcctgagagtgag
ggcgaggagcccaagcggcccccaggcatctgcgagcgcccccaccgattcagcaagggg
ctcaacggcacgccccgggagctgcggcaccagctggggcccagcctgcgcagcccgccc
cgagtcatctcccgacccccaccctccgtgtccccgcccaagtgtatgcagatggagcgc
catgtgatccggccaccccccatcagccccccgcctgactcgctacccctggacgatggg
gcagcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagccaccaa
gacctgtgtgtctgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcgg
ttgtggacccgcattgacctgaaccactgcaagtctatcacacccctgatgctgagcggc
atcatccggcgacagcccgtctccctcgacctcagctggaccaatatctccaagaagcag
ctgagctggctcatcaaccggctgcctgggctccgggacttggtgctgtcaggctgctca
tggatcgcggtctcggccctttgcagctccagttgtccgctgctccggaccctggatgtc
cagtgggtggagggactaaaggatgcccagatgcgggatctcctgtccccgcccacggac
aacaggccaggtcagatggataatcggagcaagctccggaacatcgtggagctgcgcctg
gcaggcctggacatcacagatgcctccctgcggctcatcatccgccacatgcccctgctc
tccaagctccacctcagttactgtaaccacgtcaccgaccagtccatcaacctgctcacc
gctgttggcaccaccacccgagactccttaaccgagattaacctgtctgactgcaataag
gtcactgatcagtgcctgtccttcttcaaacgctgtggaaacatctgtcatattgacctg
aggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgagatgtctgtg
agtgtccagtttgggcaagtagaagaaaaactcctgcaaaaactgagttag
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