Haematobacter massiliensis: HmaOT1_08380
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Entry
HmaOT1_08380 CDS
T05861
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hml
Haematobacter massiliensis
Pathway
hml03030
DNA replication
hml03410
Base excision repair
hml03420
Nucleotide excision repair
hml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HmaOT1_08380 (ligA)
03410 Base excision repair
HmaOT1_08380 (ligA)
03420 Nucleotide excision repair
HmaOT1_08380 (ligA)
03430 Mismatch repair
HmaOT1_08380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hml03032
]
HmaOT1_08380 (ligA)
03400 DNA repair and recombination proteins [BR:
hml03400
]
HmaOT1_08380 (ligA)
Enzymes [BR:
hml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HmaOT1_08380 (ligA)
DNA replication proteins [BR:
hml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HmaOT1_08380 (ligA)
DNA repair and recombination proteins [BR:
hml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HmaOT1_08380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HmaOT1_08380 (ligA)
MMR (mismatch excision repair)
DNA ligase
HmaOT1_08380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HmaOT1_08380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
MutL
Zn_ribbon_NUD
DUF7801
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QBJ24270
LinkDB
All DBs
Position
complement(1365397..1367649)
Genome browser
AA seq
750 aa
AA seq
DB search
MPDFKPVETLAPGEAAQELASLSDALARANRAYHTEDAPEISDAEYDALKRRNAEIEDHF
SELKRPDSPSEQVGGALAEGFSKVRHEIRMLSLENAFSDSELRDFDDRVRRYLGLSAAAP
LLYTAEPKIDGLSLSLRYENGVLVQAATRGDGAVGENVTQNALTVADIPRMLTGAPEVLE
IRGEVYMSHADFAALNERQAAAGDRVFANPRNAAAGSLRQLDATITRSRPLRFFAYAWGV
VSEPLAATQFDAIARIASLGFQTNPLTRLCNGPEEMLATYRDIEENRARLGYDIDGVVYK
VNDLDYQRRLGFRSTTPRWALAHKFPAELAWTVLEAIDIQVGRTGALSPVARLTPVTVGG
VVVSNATLHNEDYIAGLDSAGNPIREGKDIRIGDTVQVYRAGDVIPKVADVDLARRPDGT
EPYHFPETCPQCGSPAIREPGDSVRRCTGGLICPAQATEKLKHFVSRGAFDIEGLGVKQI
EMFFADDMLPVKTPADIFTLEARDKAQIAKLANRDGFGKRSAEKLFAAIDERRVIPLERF
LFALGIRHLGEVAAKDLARHYHAWPALRSAIDAAQPAAIASLAADEAEAEERAAAAQAGR
RAEISRARAAVRENVPAEAEAAWQELLSIDGVGTTLATSVVTTLAKGGHERAAVDDLVAQ
LREIEPPESRATESPVVGLTVVFTGTLEKMTRAEAKARAESLGAKVAGSVSAKTDLLVAG
PGAGSKATKAAELGIRVIDEDGWLDLIGGA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatttcaaacccgtcgagacacttgcccccggagaggccgcgcaggagttggcc
tcgctgtccgatgcgctggcccgcgccaaccgtgcctaccatacggaggacgcgcccgaa
atcagcgatgccgaatacgacgcgctgaagcggcgcaatgccgaaatcgaagaccatttt
tccgagctgaagcggcccgacagcccttcagagcaggtgggcggtgcgctggcggaaggc
ttctccaaggttcgtcacgaaatccgcatgctgtcattggagaacgcattctcggatagc
gagctgcgtgatttcgacgacagggtgcgacgttatctcggcctgagcgctgccgcgccg
ctgctctacacggcagagccgaagatcgacgggttgtcactgtcgctgcggtatgaaaac
ggcgtgctggttcaggccgcgacgcgcggtgacggcgcggtgggcgagaatgtcacccag
aacgcgcttacagtcgcagatatcccccgcatgctgaccggcgcgccggaggtgctggaa
atccggggcgaggtctatatgagccatgccgatttcgccgcgctgaacgaacggcaggcg
gcggcgggggatcgcgtcttcgccaatccgcgtaatgccgccgcagggtcgctccgtcag
ctcgacgcgacgatcacccgatcccgtccgctccgatttttcgcctatgcctggggcgtg
gtgagtgagccgctggcggccactcagttcgacgccatcgcgcggatcgcgtcgctcggc
tttcagaccaacccgctcacccgcctgtgcaacgggccggaggagatgctggccacctac
cgtgacatagaggaaaaccgggcgcggctcggatatgacatcgacggggtggtctacaag
gtcaacgatctggactaccagcggcgccttggtttccggtccactacgcctcgctgggcg
ctggcacacaagtttccggcggagctggcctggacggtgctggaggccatcgacatccag
gtgggacgaacgggcgctctttcccccgtcgcgcggctcacgccggtgacggtcggcggc
gtcgtcgtctccaatgccacgctgcacaatgaggattacatcgcggggctggattccgcc
ggcaacccgatccgcgagggcaaggacatccgcatcggcgatacggtgcaggtctaccgc
gcgggcgatgtgatccccaaggtggcggatgtggacctcgcccgccgcccggatggaacc
gagccttatcacttccccgaaacctgcccgcaatgcggaagccccgccatccgcgagccg
ggggattcggtgcgccgctgcacgggcgggctgatctgcccggcgcaggcgacggaaaag
ctgaaacatttcgtcagccggggggctttcgatatcgaggggctgggcgtcaagcagatc
gagatgttcttcgccgacgacatgttgccggtgaagacgcccgccgacatcttcacgctt
gaggcgcgcgacaaggcacagatcgccaagctcgccaatcgcgacggcttcggcaagcgc
agcgcggaaaagctgttcgcagccatcgacgagcgccgggtcattccgctggagcggttt
ctgttcgccctgggcatccgtcatctcggggaggtggcggcaaaggatctcgcccgccat
tatcacgcctggcctgcgctccgctccgcgatagatgcggcacagcctgccgccatcgca
agcctcgctgccgatgaggccgaggcggaggagcgagccgccgccgcgcaggcggggcgc
cgcgcggaaatctcgcgggcacgcgcggctgtgcgggagaacgtcccggcggaagcggaa
gcggcatggcaggaactcctctccatcgatggggtggggacaacgctcgccacctccgtc
gtcacgacgctggcaaagggcgggcatgagagagcggcggtggacgatctcgtcgcccag
ctgcgagagatcgagccgcctgaaagccgcgccacggaaagcccggtcgtcggtctgaca
gtcgtcttcaccggcacgctggagaagatgacgcgggcggaggccaaggcgcgggcggaa
tcgctgggtgccaaggtcgcaggctccgtctctgccaagacggacctgctggtggcgggt
ccgggtgcagggtcgaaggccacgaaggccgccgagctcggcattcgcgtgatcgacgag
gatggctggctcgacctcatcggcggggcgtga
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