Helcobacillus massiliensis: R3I40_03410
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Entry
R3I40_03410 CDS
T09498
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03030
DNA replication
hmm03410
Base excision repair
hmm03420
Nucleotide excision repair
hmm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3I40_03410 (ligA)
03410 Base excision repair
R3I40_03410 (ligA)
03420 Nucleotide excision repair
R3I40_03410 (ligA)
03430 Mismatch repair
R3I40_03410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmm03032
]
R3I40_03410 (ligA)
03400 DNA repair and recombination proteins [BR:
hmm03400
]
R3I40_03410 (ligA)
Enzymes [BR:
hmm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R3I40_03410 (ligA)
DNA replication proteins [BR:
hmm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R3I40_03410 (ligA)
DNA repair and recombination proteins [BR:
hmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R3I40_03410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R3I40_03410 (ligA)
MMR (mismatch excision repair)
DNA ligase
R3I40_03410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R3I40_03410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_lig_T4_1
HHH
Motif
Other DBs
NCBI-ProteinID:
WOO93650
LinkDB
All DBs
Position
725270..727534
Genome browser
AA seq
754 aa
AA seq
DB search
MSETTDLEARARIDELRAQLAEARSAYYEDDEPIMADAQYDELERELKALEEENPELKSE
ESPTETVGGAVAAGFTPTPHIQRMMSLDNAFSVEEIDEWAERTQKEAPGTPAFLTELKID
GLAVSLVYENGELIRGVTRGDGRIGEDVTANVRTIASVPQRLTTEHPPQILEVRGEVFYP
TAEFEKLNEQRRADGLAEYANPRNTAAGSLRQKDAAVTASRALEVYVHGIGAHEGGEYPT
SQSETYELLASWGLPTSPHSRVLHSLAEVREYIDEFGDKRHDLEHEIDGIVIKVDDFAHQ
RALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVKVAGSTVEKAT
LHNQFEVERKGVLIGDTIILRKAGDVIPEILGPVERLRDGSERAFEMPADCPSCGTRIAP
TNEGEKDWRCPNQKDCPAQVTGRIAHAASRGAFDIEALGEESALALTNPDQRRDEAIAAV
RAGHALDTETGRIRDADDVPGEQTPVVRTGGNLFDLTADDLRDVFVYQPLRRKGEPTGDW
RLVRAFWTKRTTTRLKSTGETRVKEEKPSATTTKLIDELAKAKDTDLWRVLVALSIRHVG
PTAARSLATAFGSMEAIRTADVDRLADTDGVGTVVAESVRAFFADQWRADLVDAWAASGV
TMEDEQDEDAPRTLEGITVVVTGSLEGFTRDGAKEAILSRGGKASGSVSKRTHFVVVGEN
AGSKADKAEELGLRILDEAQFVRLLSEGPAALKD
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaccactgatctcgaagcacgggcccgcatcgatgagctgcgcgcccagctc
gccgaagcccgctccgcgtactacgaggacgacgagccgatcatggccgacgcccagtac
gacgagctcgaacgcgagctgaaggccctcgaagaggagaaccccgagctgaagagcgag
gagtcgcccaccgagaccgtcggcggcgccgtcgcggccggcttcacccccacaccgcac
atccagcggatgatgagcctggacaacgccttcagcgtcgaggagatcgacgaatgggcc
gaacgcacccagaaggaggcgcccggcacccccgcgttcctcaccgaactgaagatcgac
ggcctcgccgtctccctcgtctacgagaacggcgaactgatccgcggcgtcacccgcggc
gacggccgcatcggcgaggacgtcaccgcgaacgtccgcaccatcgcctccgtcccgcag
cgcctgaccaccgagcatccaccccagatcctcgaagtgcgcggcgaagtgttctacccg
accgccgagttcgagaagctcaacgagcagcgccgcgccgacgggctcgccgaatacgct
aacccccgcaacaccgccgccggctcgctgcggcagaaggacgccgccgtcaccgcgtcc
cgcgccctcgaggtctacgtccacggcatcggcgcccacgaaggcggcgagtaccccacg
agccagtccgagacgtacgagctgctcgcctcctggggcctgcccaccagcccccactcc
cgcgttctgcactccctcgccgaggtgcgcgagtacatcgatgagttcggcgataagcgc
cacgacctcgagcacgagatcgacggcatcgtcatcaaagtcgacgacttcgcccaccag
cgcgccctcggctccacctcccgcgccccccgctgggccatcgcctacaagtacccgccc
gaagaggtcaccacgaagctcctggacatccaggtgcaggtgggccgcaccggccgcgtc
accccgttcggcgtgatggaacccgtcaaggtcgccgggtccaccgtggagaaggccacc
ctgcacaaccagttcgaggtggagcgcaaaggggtcctcatcggcgacaccatcatcctg
cgcaaggccggtgacgtgatccctgagatcctcggccccgtcgagcgcctccgcgacggc
agtgagcgcgccttcgagatgcccgccgactgcccctcctgcggcacccgcatcgccccc
accaacgagggggagaaggactggcgctgccccaaccagaaggactgccccgctcaggtc
accggccgcatcgcgcacgccgccagccgcggcgccttcgacatcgaagcactcggggag
gagagcgccctggccctcaccaaccccgaccagcgccgcgacgaagccatcgccgccgtc
cgcgccggccacgccctcgacaccgaaaccggccgcatccgcgacgccgacgacgtcccc
ggcgaacagacccccgtggtccgcaccggcggcaacctcttcgacctcaccgccgacgac
ctccgcgacgtcttcgtgtaccagccgctgcggaggaagggcgagccgaccggcgactgg
cgcctggtccgcgcgttctggaccaagcgcacgaccacccgcctgaagtccaccggtgag
acccgggtgaaggaggagaagccgtcggccaccaccacgaagctgatcgacgagctcgcg
aaggcgaaggacaccgacctctggcgtgttctggtggcgctgtcgatccgtcatgtcggc
cccacggcggcccgctccctggccaccgcgttcggctccatggaggcgatccgcaccgcc
gatgtcgaccgcctcgccgacaccgacggggtcggcaccgtggtcgccgaatccgtccgc
gccttcttcgccgatcagtggcgcgccgacctggtcgacgcctgggccgcctccggcgtc
accatggaggacgaacaggacgaggacgccccgcgcaccctcgagggcatcaccgtggtg
gtcaccggctccctggagggcttcacccgcgacggcgccaaggaggccatcctcagccgc
ggcggcaaggcctccggctccgtctccaagcgaacccacttcgtcgtggtcggcgagaac
gccggatccaaggccgacaaggccgaagaactgggcctgcggatcctcgacgaagcgcag
ttcgtgcgcctcctctcagagggccccgcagctctcaaggactga
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