Halobacillus mangrovi: HM131_17800
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Entry
HM131_17800 CDS
T04799
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmn
Halobacillus mangrovi
Pathway
hmn03030
DNA replication
hmn03410
Base excision repair
hmn03420
Nucleotide excision repair
hmn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HM131_17800 (ligA)
03410 Base excision repair
HM131_17800 (ligA)
03420 Nucleotide excision repair
HM131_17800 (ligA)
03430 Mismatch repair
HM131_17800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmn03032
]
HM131_17800 (ligA)
03400 DNA repair and recombination proteins [BR:
hmn03400
]
HM131_17800 (ligA)
Enzymes [BR:
hmn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HM131_17800 (ligA)
DNA replication proteins [BR:
hmn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HM131_17800 (ligA)
DNA repair and recombination proteins [BR:
hmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HM131_17800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HM131_17800 (ligA)
MMR (mismatch excision repair)
DNA ligase
HM131_17800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HM131_17800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
5_3_exonuc
BRCT_2
HHH_3
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ARI78577
UniProt:
A0A1W5ZZC8
LinkDB
All DBs
Position
complement(3553916..3555919)
Genome browser
AA seq
667 aa
AA seq
DB search
MNGSEAKERIDALKQELEQYNYEYHTLDQPSVSDYEYDKKMRELIDLEEEFPEHQTPDSP
SQRVGGAPLEAFEKVQHIIPMLSLGNAFDDQELRDFDRRVRNGTNEDVNYVCELKIDGLA
VSLRYEDGLFVRGATRGDGTTGEDITKNLKTIRNIPLRLKKPETLEVRGEAYMPKRSFMA
LNEAREANEDEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGQWEDDPADSHSERLE
KLKELGLKTNPEWKKCNNIDEVIDYVHSWVERRADLDYEIDGIVIKVDRLDQQETLGFTA
KSPRWATAYKFPAEEAVTHLRDIELSVGRTGVVTPTAILDPVKVAGTTVQRASLHNEDLI
REKDIRIGDTVVIKKAGDIIPEVVRVMEDQREGNEEPFSMPETCPECDSKLVRLEEEVAL
RCINPNCPAQLREGLIHFVSRNAMDIEGLGEKVIAQLFQEQLIHNIADLYKLEREQLLEL
ERMGEKSVQNLLQAIEASKENSLERLLFGLGVRYVGTKAANTLAQEFETMDNLLEADAER
LEAIPEIGEKMADSIARYFAKPQVIQLLEELKGLGLNMEYKGPKKSEQPEDSPFKDKTIV
LTGKMENYSRSEAKKIVEELGGKITGSVSKNTDLLIAGEDAGSKYTKASDLGIEIWDEEE
FTKALSN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatggatctgaagcgaaagaaagaattgacgctttgaaacaagagcttgaacaatac
aattatgaataccacacgcttgatcaaccaagtgtttcagactatgaatatgataaaaaa
atgcgtgagctgattgatttagaggaggagtttccggagcaccagacgcccgattctccc
tctcagcgcgttggtggagctccgcttgaagcgtttgagaaagtccagcatatcatccct
atgctcagcctcgggaatgcatttgatgaccaggagctacgcgattttgatcgccgcgtc
cgtaatggtaccaatgaagatgtaaactatgtctgcgagttgaaaattgatggcctcgct
gtgtctcttcgttatgaggacggcttgttcgtccgcggtgccactcgtggtgacggtacg
acaggtgaggacattaccaaaaacttgaagacgattcgcaatattcctcttcggcttaag
aaacccgagacgcttgaagtccgcggagaagcgtatatgccgaagcgctcgttcatggcg
ttgaatgaagcgcgtgaagccaatgaggatgagccatttgcgaaccctcgaaatgcagcg
gcaggttcactgcgtcagctcgatccgaagattgcagctaagcgtaatctggatatcttt
ttatatggggttggccagtgggaggatgatccagctgattcccacagcgaacgcttagaa
aagttaaaagaactcggattaaaaacgaacccggaatggaaaaagtgtaacaatattgac
gaagtcatcgactatgttcatagctgggtggaacgccgggcggatcttgactatgaaatt
gacggcattgtaataaaagtggatcgtcttgatcagcaggaaacgcttggattcacagcg
aaaagcccacgctgggcaacggcctacaagtttccagctgaagaagctgtaacacacctc
cgtgacattgagctcagcgttggccgtacaggggtcgttacaccgactgccattcttgat
ccggtaaaagtcgctggtacgaccgtgcaacgcgcatctcttcataacgaagacttgatc
cgtgagaaggacatccgcattggggatacagtggtcattaaaaaagcaggcgatatcatt
ccggaagttgtccgagtcatggaggatcagcgtgaaggcaacgaagagccgttttccatg
ccagaaacatgccctgaatgtgacagtaaactcgtccgtctggaagaagaagtagcgcta
agatgtatcaatccgaactgtcccgcgcagcttcgtgaagggctgattcactttgtttcg
cgaaatgcaatggatattgaaggacttggggaaaaagtgatcgcacagcttttccaggaa
caactcatccataacattgctgatctttataagcttgagcgcgaacagctgttggagctt
gaacgtatgggtgaaaaatcggtgcagaatcttttgcaggctatcgaagcttcgaaagag
aattcgttggagcgtctgcttttcgggctcggtgtccgatacgtcggaacgaaagcagca
aatactctagctcaggaatttgaaacgatggacaacctgctagaagcggatgctgaaaga
ctcgaagctattccagaaatcggagaaaagatggccgactctatcgcgcgttacttcgct
aaacctcaggtcatccagttattggaagagttaaaaggtctcgggttgaacatggaatat
aaaggaccaaagaagagtgaacagccggaggattcaccgtttaaagacaaaactatcgta
cttactggaaaaatggaaaactacagccgttcagaggcgaagaaaatcgtagaggagctc
ggaggcaagataacaggaagtgtcagtaaaaatacagaccttctgattgctggggaagac
gccggttccaaatatacgaaagcctctgatttaggtattgaaatttgggatgaagaagag
tttacgaaagctttatccaactag
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integrated database retrieval system
