Hippea maritima: Hipma_0937
Help
Entry
Hipma_0937 CDS
T01456
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmr
Hippea maritima
Pathway
hmr03030
DNA replication
hmr03410
Base excision repair
hmr03420
Nucleotide excision repair
hmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hipma_0937
03410 Base excision repair
Hipma_0937
03420 Nucleotide excision repair
Hipma_0937
03430 Mismatch repair
Hipma_0937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmr03032
]
Hipma_0937
03400 DNA repair and recombination proteins [BR:
hmr03400
]
Hipma_0937
Enzymes [BR:
hmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hipma_0937
DNA replication proteins [BR:
hmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hipma_0937
DNA repair and recombination proteins [BR:
hmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hipma_0937
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hipma_0937
MMR (mismatch excision repair)
DNA ligase
Hipma_0937
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hipma_0937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
Nlig-Ia
HHH
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
RUBY_RBDX
UPF0758_N
KorB
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
AEA33906
UniProt:
F2LVX2
LinkDB
All DBs
Position
complement(923820..925823)
Genome browser
AA seq
667 aa
AA seq
DB search
MNDREAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQFYDENSP
TVRVGGAPLNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVEPKF
DGLSIDLIYENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGEVLL
TKEEFERINQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGYKRK
ILSQHDALEALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVDDFE
LQESLGATTKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVVVSR
ASLHTMDEIEKKDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKKFVMPEKCPVCGSRV
VKDGAYYRCSNINCPKVLKESIKHFVSRKAMNIDGFGDKLIEQLVDKGIVKNIADIYELD
KETLMGLDRVGEKLAENLISSIQRSKGTTFAKFIYALGIRHVGEFVAKLLAERFKNLENL
KKATKDELLAIDGIGEEIADSVVSFFSEPKNLQTIDKLLYYGIHFEDKTKEHSRIAGKSF
VFTGTLSKPREYFKELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEE
LYRLLEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatagagaagccaaagaaaggatagaacagctaagaaaaaaacttcactaccat
aactatcgttattatgtactggatgaccctataatctctgattcagaatatgatatgatg
cttaaggagttaaaggaattagaagagtcctatcctcagttttatgatgagaactcacct
accgttagagttggcggtgccccgttaaataaatttgaaaaggttgaacataaaataccc
atgctttcacttgaggatggatttgatgataacgatataagggagtttgatagaaaagtt
aaaagatttttaaagctaccagaggataaaaagatagcatatagtgtagaacctaaattc
gatggactgtctatagatttgatttatgagaacggtaagcttaccgttgcgtctacaaga
ggagacggttacgtgggcgaaaatgttacccaaaacataaaaactattcgcaatgttccg
cttgttttgcccattgatactcctccaatgtatttagatgtgcagggtgaggttttgcta
accaaagaggagtttgaaaggattaaccaggaaagactaaagaatggattgaatgtattt
gctaatccaaggaatgcggctgcgggttcagttaggcagcttgacccaaaggagacagca
aagagaaatcttattatgataatgtactacattcgccaaattgaaggatataaaagaaaa
attttatcacaacatgatgccttggaagcattaaaagagatgggttttcctacaagttcc
ctaaacaggcttgttgttggcatagaggaggctattgaatacaaaaaggagcttgagata
aaaagagagacattgccctacgaactcgacggtattgttataaaggttgatgactttgag
cttcaagagagtcttggagcaacaacaaaatcaccccgttgggctatagcctttaaattc
cctgctcaacaggctactactaagataaaggatatagaggtaaatgtgggaagaactggt
attctaacgcctgttgctattttagaaccggtaaacatagggggtgttgttgtttcaagg
gcaagcctccatacgatggacgagatagagaagaaggatataaggattggggatgtggtg
ttcgttcagagggctggagatgtgataccggaggttgtaaagcctgttaaggatttaagg
gatggcagcgagaaaaagtttgtaatgcctgagaaatgccctgtatgcggttcaagagtg
gtgaaggatggggcttactatcgttgttcaaatataaactgcccaaaggttttgaaggaa
tccataaagcactttgtttcaagaaaggctatgaatatagatggatttggtgataaactc
atcgagcaattggtggataaaggtatagttaaaaatattgcagatatctatgagcttgat
aaagaaacccttatgggcttggatagggttggcgaaaagttggcggaaaacctaatctca
tctattcagcgttcaaaaggcacaacatttgctaaatttatatacgcactgggtatcagg
catgtgggcgagtttgttgcaaaactgttggctgagaggtttaagaatttggagaatttg
aaaaaggccacgaaggatgagcttttggctatagatggtataggcgaagagatagcagac
agcgttgtttcgtttttctcagagcccaaaaaccttcagactatagataaactcctgtat
tatggcatacattttgaggataaaacaaaagagcactcaagaattgctggaaagagtttt
gtttttacagggactttgtcaaaaccacgggagtactttaaagagctcattgaagagcgc
ggaggtatagttagaaatagtgttagcaaaaatttagattatctggttgtaggtgaaaat
ccgggttctaagcttaaaaaagctaagcaaaatggagtaagcgtgataagcgaagaagaa
ctgtatagactattggaggggtaa
DBGET
integrated database retrieval system
