Hymenobacter monticola: MTP16_15680
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Entry
MTP16_15680 CDS
T08220
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmt
Hymenobacter monticola
Pathway
hmt03030
DNA replication
hmt03410
Base excision repair
hmt03420
Nucleotide excision repair
hmt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTP16_15680 (ligA)
03410 Base excision repair
MTP16_15680 (ligA)
03420 Nucleotide excision repair
MTP16_15680 (ligA)
03430 Mismatch repair
MTP16_15680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmt03032
]
MTP16_15680 (ligA)
03400 DNA repair and recombination proteins [BR:
hmt03400
]
MTP16_15680 (ligA)
Enzymes [BR:
hmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTP16_15680 (ligA)
DNA replication proteins [BR:
hmt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTP16_15680 (ligA)
DNA repair and recombination proteins [BR:
hmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTP16_15680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTP16_15680 (ligA)
MMR (mismatch excision repair)
DNA ligase
MTP16_15680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTP16_15680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
Zn_ribbon_FGT1_2
ABC_tran_CTD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UOE32566
LinkDB
All DBs
Position
3799827..3801929
Genome browser
AA seq
700 aa
AA seq
DB search
MPDTPAIQQRILALTERLHHLNHQYYQNDVSEVSDQEFDALLRELQQLETEHPDLAQPNS
PTRRVGGTITKQFPTAVHRYPMLSLGNTYSEDDLREFDERVQRGLEGAPYSYVCELKFDG
VAMSLSYEHGQLTQGVTRGDGTRGDVVTPNVRTIKTLPLALRPGPDQPQDFEVRGEVFMP
LPVFDELNAEREQNGEALLANPRNAASGTLKLQDSSQVAARKLRFYAYSLLTPGRHFPTH
SAALEALSRYGLPVSDTWRRAANINEVLDFVHHWAKKRFDLPVATDGIVIKVDNLRQQDQ
LGYTAKSPRWAIAYKYPAEAARTRLNEVIYNVGRTGAVTPVAMLTPVPLAGTVVKRATLH
NANQIELLDLRLGDTVYVEKGGEIIPKITGVDLSARPAEAVPIQYPTACPACGTPLVRPE
GEAHFRCPNERGCPPQLKARLEHYVSRKALNIDGLGAETVGRFFDLGMVKTVADIYDLPA
RRAELVTLERLGEKSIDNLIAGIEASKQVPFPRVLFGLGIRYVGETVAQKLAAHYRSIDA
MMAASAEEMAAVPEVGGVIAAQAAHWFQQPENRELIERLRTAGVQLAVTGEAPVPASDRL
AGLTFVISGVFENHSRDELQQLIISNGGKITGSISKKLSYLVAGDNMGPAKREKALGFKV
PIISESELMALLPNPDEAPADDAAIDAPETSAPGVQRSLF
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatacgcctgccatccagcaacgcatcctggccctcaccgagcggctgcaccac
ctcaaccaccagtattatcaaaacgacgtgtccgaggtatcggaccaggagtttgatgcc
ctgttacgcgagctgcagcaactggaaaccgaacaccccgacctggcccagcccaactcg
cccacccggcgcgtgggcggcaccatcaccaagcagtttccgacggcggtgcaccgctac
cccatgctcagcctgggcaacacctactccgaagacgacctgcgcgagtttgacgagcgg
gtgcagcgcggcctcgaaggcgcaccctacagctacgtgtgcgagctaaagttcgacggc
gtggccatgagcctaagctacgagcacggccagctcacgcagggcgtgacccgcggcgac
ggcacccgcggcgacgtggtgacgcccaacgtgcgcaccatcaaaacgctgccgctggcc
ctgcgccccggccccgaccagccccaggattttgaggtgcgcggcgaggtattcatgccg
ttgccggtgtttgacgagttgaacgccgagcgcgagcaaaacggcgaggccctgctggcc
aacccgcgcaacgccgccagcggcaccctcaagctgcaggattcgagccaggtggcggcg
cgcaagctgcgcttctacgcttactcgctgctcacgcccggccgccactttcccacccac
agcgccgccctcgaagccctgagtcgctacggcctgccggtgtcggacacctggcgccgg
gcggccaacatcaacgaggtgctggattttgtgcaccactgggccaaaaagcgcttcgac
ttgccggtggcaacggatggcattgtcattaaggttgacaacctgcgccagcaggaccaa
ctgggctacaccgcgaaaagcccgcgctgggccattgcctacaagtaccccgccgaagcc
gcccgcacccgcctcaacgaagtgatttacaacgtaggccgcaccggggccgtgacgccg
gtggccatgctcacgcccgtgccgctggccggcaccgtggtgaagcgcgccactctgcac
aacgccaaccagatagagctgctcgacctgcgcctcggcgacacggtgtacgtggagaag
ggcggcgaaatcatccccaaaatcaccggcgtggacctgagcgcccgccccgccgaagcg
gtgcccattcagtaccccacggcctgcccggcctgcggcacgccgctggtgcgacccgag
ggcgaggcccacttccgctgccccaatgagcgcggctgcccgccccagctcaaggcccga
ttggaacattacgtgtcgcgcaaggcgctgaacatcgacggcctgggtgccgaaacggtg
ggtcggttcttcgatttgggcatggtgaaaacggtggccgacatctacgacctgcccgcc
cgccgggccgagctggtgacgttggagcgcctgggcgagaagagcatcgacaacctcatt
gccggcatcgaagccagcaagcaggtgccgtttccgcgcgtgctattcggcctcggcatc
cgctacgtgggcgaaaccgtggcccagaagctggcggcgcactaccgcagcatcgatgcc
atgatggccgcctcggccgaagaaatggccgcggtgcccgaagtaggcggcgtcattgcc
gcgcaggcggcgcactggtttcagcagcccgaaaaccgcgagctgattgagcgcctgcgc
acggccggcgtgcagctggccgtgaccggcgaggcgcccgtgccggcttccgaccgcctg
gcgggcctcaccttcgtgatttcgggcgtgttcgaaaaccacagccgcgacgagctgcag
cagctcatcatctccaacggcggcaaaatcacgggctccatcagcaagaagctgagctac
ttggtggccggcgacaacatgggcccggccaagcgcgaaaaggcgctgggcttcaaagtg
cccatcatttcggaaagcgagctaatggccctgctgcccaacccagatgaagcgcctgcc
gatgatgctgcgatagatgcgccggaaacgtcggcgccgggcgtacagcgcagtctcttt
tag
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