Helicobacter mastomyrinus: V3I05_10335
Help
Entry
V3I05_10335 CDS
T11030
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmy Helicobacter mastomyrinus
Pathway
hmy03030
DNA replication
hmy03410
Base excision repair
hmy03420
Nucleotide excision repair
hmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V3I05_10335 (ligA)
03410 Base excision repair
V3I05_10335 (ligA)
03420 Nucleotide excision repair
V3I05_10335 (ligA)
03430 Mismatch repair
V3I05_10335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmy03032
]
V3I05_10335 (ligA)
03400 DNA repair and recombination proteins [BR:
hmy03400
]
V3I05_10335 (ligA)
Enzymes [BR:
hmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V3I05_10335 (ligA)
DNA replication proteins [BR:
hmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V3I05_10335 (ligA)
DNA repair and recombination proteins [BR:
hmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V3I05_10335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V3I05_10335 (ligA)
MMR (mismatch excision repair)
DNA ligase
V3I05_10335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V3I05_10335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
HHH_2
Nlig-Ia
DNA_ligase_ZBD
SeqA_N
BRCT_2
DUF3880
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-ProteinID:
XAM18064
LinkDB
All DBs
Position
2029203..2031158
Genome browser
AA seq
651 aa
AA seq
DB search
MTSEEYHTQVQILKKMAYHYYVLDEPIATDEQYDKLYHQILVFEKSNPHLIDFTSPTQRV
GDTPLESFSKNSHIQRMWSLEDVFNTDELDEWLQRIYKVYPHATFTCSPKFDGASLNLLY
SQGKLISAATRGNGIEGELVTQNAKTIQSIPLEIDFMGDIEIRGEVVIAKDDFESINAER
LKDNQSLFANPRNAAAGSLRQLDSRITAQRKLRFMPWGIGAGLEHFASFYDALQSIIGFG
FIPVPFLKHCKDKVDIQDIYNLLLSQRNSYAIMLDGMVIMLDDIASQHQLGWTIKAPRFA
CAYKFPAIEKSSKILSVSLQVGRTGIITPVAELMPVEIEGAMIARATLHNFSEIERKDIM
IGDEVIIIRSGDVIPKIIKPLVGLRDGTQKAIVKPTHCPVCGEELLVEEVFIKCQNLSCE
ARVIESIIHFASKKALNIDGLGEKIVIQLYENALVRNIKDIYTLNTTQLLALEGWQDKRA
QNLINAIQDTIGVELWRFINAVGIEHIGEGASKKLAQKFGLETFNISLEDVMSLDGFGEE
MAYSLIEFNRANKALIEQLLAIIQPRIEILQIDSSHIFYGKTIVLTGTLSQPRDTISALL
ESKGAKIVSSVSKKTDFVVYGEKAGSKLEKAQDLGIKTLNEAELFTLLTEE
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtgaagaataccacactcaagtgcagattctaaagaaaatggcttatcattat
tatgtgcttgatgagccaatagctactgatgagcaatatgataagctttatcaccaaatc
ctagtatttgaaaaaagcaatcctcaccttattgatttcacctctcctacccagcgcgtg
ggtgatacacccttagaatcttttagtaaaaatagtcatatccagcgtatgtggagctta
gaagatgtgtttaatactgatgagctagatgaatggctacaaagaatctacaaagtctat
cctcacgcgactttcacttgctcacctaagtttgatggtgcgagtttgaatctactttat
tcacagggcaaactcataagtgcggctacgcgaggaaatggcatagagggagaattggta
acgcaaaatgcaaaaacgatacaaagcattccgcttgaaatcgactttatgggggatatt
gagatacgtggggaggtagtcattgctaaagatgattttgaatctatcaatgcagagcga
ttaaaagacaatcaaagtctttttgccaatcctcgaaacgctgctgcagggagtttaaga
cagctagattctagaatcactgctcaacgtaaattacgctttatgccttggggtattggg
gcgggactagagcattttgcaagtttttatgacgctttgcaaagcattataggctttggc
ttcatacctgtgccgtttttgaagcattgcaaagataaggtggatatacaggacatatat
aaccttctcctttctcaacgcaatagttatgcgattatgcttgatggtatggttattatg
cttgatgatatagcctcccaacaccagctaggttggacgattaaagccccgcgatttgct
tgtgcgtataaattccctgcgattgaaaaaagctccaagattttatctgtgagtttgcaa
gtagggcgcacgggaattatcacgcctgtggcagagcttatgcctgtggagattgagggg
gcgatgattgcacgtgcgactttgcataattttagcgagattgagcgcaaggatattatg
attggcgatgaagtgattattatccgcagtggcgatgtgataccgaaaatcattaagccc
cttgtaggtttgcgtgatggcacacaaaaggctattgttaaacctacgcattgccctgtg
tgcggtgaggaactccttgtcgaagaggtttttatcaaatgtcaaaatcttagctgtgag
gcacgcgtgatagaatctattattcattttgcatccaaaaaggcactaaatatcgatggt
ttgggtgaaaaaatcgtgattcaactctatgaaaatgcgcttgtgcggaatatcaaagat
atttataccttgaatactacgcagcttttagctcttgagggttggcaagacaaacgcgca
caaaacctcattaatgcgatacaagatactataggtgtggaattgtggcggtttatcaat
gcagttgggattgaacatattggcgaaggagcgagcaagaaactcgcgcaaaaatttggc
ttagagacttttaacatatctttagaagatgtgatgagtcttgatggcttcggggaggag
atggcgtattcccttattgagtttaaccgagcaaacaaggcacttattgagcaattactt
gccatcattcagccacgtatagagattttacaaattgatagtagccatattttttatggt
aaaactatcgtgcttacaggcacactttcccaaccacgcgatactatcagcgcactttta
gaatctaaaggcgcaaagattgtctcaagcgtgagtaaaaagacggactttgtcgtttat
ggagaaaaagcagggagcaaactagagaaagcacaagatttaggcataaagacattaaac
gaagcagagcttttcacccttcttacggaagaatga
DBGET
integrated database retrieval system
