Hydrocurvibacter mobilis: WCX87_07140
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Entry
WCX87_07140 CDS
T11200
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hmz Hydrocurvibacter mobilis
Pathway
hmz03030
DNA replication
hmz03410
Base excision repair
hmz03420
Nucleotide excision repair
hmz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCX87_07140 (ligA)
03410 Base excision repair
WCX87_07140 (ligA)
03420 Nucleotide excision repair
WCX87_07140 (ligA)
03430 Mismatch repair
WCX87_07140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmz03032
]
WCX87_07140 (ligA)
03400 DNA repair and recombination proteins [BR:
hmz03400
]
WCX87_07140 (ligA)
Enzymes [BR:
hmz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCX87_07140 (ligA)
DNA replication proteins [BR:
hmz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCX87_07140 (ligA)
DNA repair and recombination proteins [BR:
hmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCX87_07140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCX87_07140 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCX87_07140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCX87_07140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
XAU06979
LinkDB
All DBs
Position
complement(1441403..1443358)
Genome browser
AA seq
651 aa
AA seq
DB search
MNYEEYKKAVEELNRYAYHYYVEDNPITTDEVYDKLYHEVLEYEENNPYQVLDNSPTQRV
GDVVSEGFHKAVHKSRMWSLEDVFNEEDLKKWLARVFKLDDRAAFYCEPKYDGASLNLYY
EGGKLVQAITRGDGVTGEDITQNARTIKTIPLRIDYMEPIEIRGEVVIFKSEFEKINEER
AKNGENIFANPRNAAAGSLRQLDSSITANRNLVFLPYGVGQNTLDIPLLSKKMEFIYSLG
FKTPPHRATCKWLLDIEKVYEQMKNDRDSYEMMLDGMVVKVDQVESQESMGYTVKYPRWA
VAYKFPAVEKITTVKDIILQVGRSGVITPVAVVEPTNIDGVVVERATLHNFDEIQRKDIR
IKDKVIILRSGDVIPKIIKVLEHERAGDEAEVMRPTECPVCGSELLDEGALIKCQNLTCK
ARVVNSIIYFASKQCLNIDGLGDKIVKALFDSGVVKSVEDIFSLTLDKLLALEGFKEKKS
QNLLDAIENVKGCDCWRLINALGIEHIGEVASKSLCENFGLNFIDASKEQIISIDGIGEE
MAESVVEFVRVNKEHILRLIEILDPKVPEPKAEAKENPFKAKTIVLTGSMSQSRTEIKEM
LESLGAKVSGSVSKKTDMVIYGDDAGSKYDKAVELGVQTLTEDEMRGMLDE
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
ttgaattacgaagagtataaaaaagcggtagaagagttaaacagatatgcataccactac
tatgtcgaagataacccgataaccacagatgaggtctacgacaagctttaccatgaagta
ctggagtatgaagagaacaacccttatcaggtactggataactctcctacgcaaagagtc
ggggacgtcgtctcagaaggttttcataaagccgtgcataaaagcaggatgtggagttta
gaggatgtctttaatgaagaggatctcaaaaagtggcttgctcgtgtctttaaacttgac
gacagggctgctttttactgcgaaccgaaatatgacggagcgagtctgaacctttactat
gaaggcggaaagctggttcaggccattacccgcggtgacggagtcacgggtgaggatatt
acgcaaaatgcaaggacgatcaagactattccgcttcgaatcgattatatggaacctata
gagatacgcggtgaggtcgtcatcttcaagtcggagtttgaaaagataaacgaagagcgt
gcgaaaaacggcgagaacatctttgcaaatcccagaaatgccgcagcaggaagtcttcgc
cagcttgattcaagcattacggcaaacagaaaccttgtgttcctgccttacggtgtggga
caaaacacgcttgatataccgctgctcagtaaaaagatggagttcatctactctttgggg
tttaaaacacctcctcatcgtgctacatgtaaatggcttttagatatagaaaaagtttat
gagcagatgaaaaacgaccgcgacagctatgagatgatgcttgacgggatggtcgttaag
gtcgatcaggtagagtcgcaggaaagtatgggctatacggtcaaatacccacgctgggca
gtcgcatacaagttccctgccgttgagaagataacgactgttaaagatatcatcctacaa
gtaggaagaagcggggtcataactccggttgccgtggtagagcctacgaacatcgacggt
gtcgtggtagagcgtgcgacgcttcataactttgacgagatacagagaaaagatatccgc
ataaaagacaaggtgatcatccttagaagcggtgacgtcataccaaagatcataaaagta
ctagaacatgaaagagcaggtgatgaagcagaagtgatgcgtccgacggagtgtcctgta
tgtggaagcgaactacttgacgagggtgcgcttatcaagtgtcaaaaccttacatgtaag
gcaagagtcgtaaactcgatcatctattttgcatcaaaacagtgcctcaatatagacggg
cttggagacaagatcgtcaaagcgctttttgactcaggagttgtcaaaagtgtggaagat
atcttctcgttgacactggataaacttttagcgctcgaaggttttaaagagaaaaaatcg
cagaacctgctggacgctatagaaaatgtaaaagggtgcgactgctggagacttataaat
gctctggggatcgaacatatcggagaggtcgcatcaaaaagtctttgtgagaatttcgga
ctgaactttatcgatgcttcaaaagagcagatcatctcaatagacgggatcggcgaagag
atggctgagtccgttgtggagtttgtaagagtcaacaaagagcatatcttaagacttata
gagattttggatccaaaagtccctgagccaaaagccgaggcaaaagagaacccttttaaa
gcaaagaccatagtactgacgggttctatgagtcagtcccgtacggagataaaagagatg
ctggagtctttaggtgcgaaagtctcgggttcagtctctaaaaaaacagatatggtaata
tacggagatgatgccggaagcaaatatgacaaagctgtagagcttggcgtacagacttta
acggaagatgagatgagagggatgttggatgaataa
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integrated database retrieval system
