Halothiobacillus neapolitanus: Hneap_0163
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Entry
Hneap_0163 CDS
T01104
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hna
Halothiobacillus neapolitanus
Pathway
hna03030
DNA replication
hna03410
Base excision repair
hna03420
Nucleotide excision repair
hna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hneap_0163
03410 Base excision repair
Hneap_0163
03420 Nucleotide excision repair
Hneap_0163
03430 Mismatch repair
Hneap_0163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hna03032
]
Hneap_0163
03400 DNA repair and recombination proteins [BR:
hna03400
]
Hneap_0163
Enzymes [BR:
hna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hneap_0163
DNA replication proteins [BR:
hna03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hneap_0163
DNA repair and recombination proteins [BR:
hna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hneap_0163
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hneap_0163
MMR (mismatch excision repair)
DNA ligase
Hneap_0163
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hneap_0163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACX95027
UniProt:
D0KWN0
LinkDB
All DBs
Position
164040..166097
Genome browser
AA seq
685 aa
AA seq
DB search
MASSLPDLFSAPSEDGDRARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIES
AHPEWITPDSPTQRVGSPTFTTRFAPVTHHQAMLSLDNVFSVEEWDAFTQRIQDRLKRDA
PLVFAAEPKFDGLAINLIYRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSC
DLLEVRGEIVMSHKAFAALNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAY
GVGAVDGADLPDSQLGLLDWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDID
GVVFKINAQSEQDALGFVAKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDP
VFVGGVTVSNITLHNIDEITRKDIRIGDTVVVRRAGDVIPEVVRVLPELRPADARLVALP
ATCPVCGSEVVRAEGEAIARCSGGLFCPAQRREAIKHFASRKAMNIDGLGEKWIELLLEH
KLVEHVDDLFHLTVPQVLTLPRMGEKSAQNLVDALSAAKQTTLPRFLYALGIREVGEVTA
AGLAAHFRNLDALNAATLEDLQAVPDVGPVVAQHVFTFLRQPHNQEVIRNLIDAGVHWPA
IVATDANALPLAGRTYVLTGTLVGMSREEAGERLKALGAKVSGSVSSKTTAVIAGSEAGS
KLTKANDLGVPVLDETDLQKLLRNL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcgttacctgacttgttctccgcgccgtccgaggatggcgaccgcgcccgt
ttgcttgcgctgcgtgacgaaatcgaacggcacaacttccgttattacgtgctggacgat
cctgaaataagcgatgccgccttcgatcggctcatgcgtgaattgcagcagattgaatcc
gctcaccccgaatggatcacgccggattcgcccacccagcgagtcggcagcccgacattt
accacccgtttcgcccccgttacacatcatcaggccatgttgtcgctggataatgtgttc
agcgtcgaggaatgggatgcttttacccagcgtattcaggatcgcttgaagcgcgatgca
ccgctcgtgtttgccgccgaacctaaattcgatggcctcgcgatcaacctgatctaccgt
caggggcagctggtgcaggccgcaacgcgcggcgatggacagaccggcgaggatgtgacc
ttgaacgtccgcaccatcgccgccattccccagcaattaccggattcgctgctctcctgc
gatctgctggaagtgcgcggtgagatcgtcatgtcgcacaaggccttcgccgcgctgaat
gccgccgccgatgcccgtggtgacaaacgcttcgtgaacccgaggaacgccgccgccggc
tccttgcggcaaaaggacccgcgaataacggccaagcgccagctacagtttttcgcctat
ggtgtgggcgcggttgatggcgccgatttgcccgatagccaactgggcctgctcgattgg
ttggccgatttggggtttaccgtcagcgagtggcgtcgccgctgcgaggggcgcgatgag
gtgctggcctatcagcaggaaatgagcgcgcgccggtcgcaactcgattacgacatcgat
ggcgtcgtgttcaaaatcaacgcccagtccgagcaggatgcgctgggctttgtggccaag
gcgccgcgttgggccatcgcattcaagttcccggcagaagaggccacaagccgcgtccac
gcggtcgattttcaggtaggccgcaccggagcgctcacgccggttgcgcgcattgatccg
gtgtttgtcggtggggtcacggtgtctaacatcaccctgcacaatatcgatgaaattacg
cgcaaggatattcggattggcgatacggtcgttgtccggcgggcaggcgatgtgattccc
gaagttgttcgcgtgctgcctgaattgcgcccagccgatgcccgcctagtggcgctgccc
gccacttgccccgtttgtggttccgaagttgttcgagcagaaggtgaggccatagcccgt
tgcagtggcggtcttttctgcccggcccagcgccgtgaggccatcaagcacttcgccagt
cgcaaggcgatgaatatcgatgggctaggcgaaaagtggatcgaactgctgctcgaacac
aagctggtcgagcatgtcgatgatttgtttcatctcaccgtgccgcaggtgttgaccctg
ccacgaatgggtgaaaaatccgcgcagaaccttgtggatgccttgtctgcagccaaacaa
accaccttgccccgtttcttgtatgcgctgggtattcgggaagtgggcgaggtgacggct
gcggggctggcggctcacttccgtaatctggatgcgctgaacgccgcgacgcttgaggat
ctgcaagccgtgccggatgtagggccggtggtggcgcagcacgtatttacgttcctgcgt
cagccacacaatcaggaagtcatccgcaatctgatcgatgccggagtacactggcccgcc
atcgttgcaacggatgcgaatgcattgccgcttgccggcagaacctatgtgctgacgggt
acgttggttggcatgtcgcgagaagaggcaggcgaacggctcaaggcgctgggcgcaaaa
gtcagcggcagcgtttccagcaaaaccaccgccgtgatcgcggggagcgaggcgggcagt
aaactgaccaaagcaaatgatctgggcgtgcccgtgctggatgaaaccgacttgcagaaa
ctactaaggaatctctga
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