Hyphomicrobium nitrativorans: W911_16335
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Entry
W911_16335 CDS
T02943
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03030
DNA replication
hni03410
Base excision repair
hni03420
Nucleotide excision repair
hni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
W911_16335
03410 Base excision repair
W911_16335
03420 Nucleotide excision repair
W911_16335
03430 Mismatch repair
W911_16335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hni03032
]
W911_16335
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_16335
Enzymes [BR:
hni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
W911_16335
DNA replication proteins [BR:
hni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
W911_16335
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
W911_16335
NER (nucleotide excision repair)
GGR (global genome repair) factors
W911_16335
MMR (mismatch excision repair)
DNA ligase
W911_16335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W911_16335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AHB49617
UniProt:
V5SGI8
LinkDB
All DBs
Position
complement(3399255..3401387)
Genome browser
AA seq
710 aa
AA seq
DB search
MSKSKKKPELHPVEELSESDAAAELARLAAEIAQHDLLYYQSDAPEISDADYDALRQRND
AIEARFPALVRADSPSHRVGAPASETFAKVRHRVPMLSLGNAFDDVDLTEFAARVRRFLS
FKPEDALAFTAEPKIDGLSISIRYEEGRLVEAATRGDGAEGENVTANVRTIGEIPHTLRG
SNVPAVAEIRGEIYMSHADFAALNRAQAEAGGKVFANPRNAAAGSLRQLDSSITASRPLC
FFAYAWGEMSDMPADTQKGMVEAFAKWGLPVNPLMQLCESADELLAFYADIADRRASLGY
DIDGVVYKVNRLDLQERLGFVSRSPRWAIAHKFPAEQAVTVLRDIEIQVGRTGSLTPVAK
LEPVTVGGVVVSNATLHNEDEIARKDIRIGDTVVVQRAGDVIPQIVRVMVEKRPAGAEPY
QFPKTCPICGSHAVREADESPGAGGVVRRCTGGLVCPAQAKERLKHFVSRLAFDIEGLGE
EKIALFFDEGLIRRPADIFTLETRDNASEVPLAKRKGFGAKSVEKLLRAIDARRKMPLDR
VIFALGIRHVGETTAKDLARAYQTWEAFRSAVDAAVAGGKDSEAYADIDAIEGIGETVVD
ALVDFFSEPHNIEAVDDLLSHVQVTPFVRQTVVESPVSGKTVVFTGKLERMGRSEAKARA
ERLGAKVSGSVSAKTDYLVAGADAGSKLKNAQALGVAVLTEDEWLDLIGT
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagagcaagaaaaagcccgaactccaccccgtcgaggagttgagcgaaagcgac
gccgcggcagaactcgcgcgtcttgccgccgagatcgcgcagcacgacctcctctattat
cagtccgacgctcccgagatctcggatgccgactacgatgcgctccgccagcgcaacgac
gcgatagaggctcgcttccctgcgctcgtgcgcgcagacagtccctcgcatcgcgtcggc
gcgcccgcgtccgaaaccttcgccaaggttcgccatcgtgtgccgatgctgtcgcttggc
aatgccttcgacgacgttgacctcacggagttcgcggcccgcgtccgccgcttcctatcg
ttcaagcccgaagacgcgctcgccttcacggccgagccgaagatcgacggtctctcgatc
tcgatccgctacgaggagggccgcttggtcgaagccgcgacgcgcggtgacggcgcggag
ggcgagaacgtcacggcgaatgtgcgcaccattggcgagatcccccacacgcttcgagga
tcgaacgtcccggccgtcgcggaaatccgcggtgagatctatatgagccacgccgacttt
gcggcgctcaacagggcgcaggccgaggcggggggcaaggtgttcgccaatccgcggaat
gctgctgccggctcgttgcgccagctcgattccagtatcacggcatcccgcccgctctgc
ttcttcgcatacgcatggggcgagatgtcggacatgccggcggacacgcagaagggcatg
gtcgaggccttcgcgaagtggggcctgcccgtgaatccgctcatgcaactgtgcgagagt
gcagacgaactcctggcgttttatgccgacatcgcggaccgccgcgcgtcgctcggctac
gacatcgacggcgtcgtctacaaggtgaaccggctggacctgcaggagcggctcggtttt
gtgtcccgttcgccgcgttgggccatcgcgcacaagttcccggccgagcaggccgtcacg
gtgctgcgcgacatcgagatccaggtgggccgcacgggttcgctcacgcccgtcgcgaag
ctggagcccgtgaccgtcggcggcgtggtcgtctcgaacgcgacgctgcacaacgaagac
gagatcgcgaggaaggacattcgcatcggcgacaccgtcgtcgtgcagcgcgcgggcgac
gtcatcccgcagatcgtccgcgtcatggtcgagaagcggccggcaggcgccgagccgtac
cagtttccgaagacctgcccgatctgcggcagccacgccgtgcgcgaagccgacgagagc
ccgggggcaggcggcgtcgtgcgccgctgcacgggcgggctcgtctgcccggctcaagcg
aaggagcgcctcaagcatttcgtctcgcgcctggccttcgacatcgaaggcctcggagaa
gagaagatcgcgctcttcttcgacgaaggcttgatccgccgtcccgccgacatcttcacg
ctcgaaacgcgcgacaacgcaagcgaagtgccgcttgcaaagcgcaagggttttggcgcc
aagtcggtcgagaaactgctccgcgccattgatgcgcgccgcaaaatgccgctcgatcgt
gtgatcttcgcgctcgggatccgccatgtgggcgagaccacagccaaggatctggcacgc
gcctatcagacgtgggaggcgttccgttcagcggtggacgcagccgtcgcgggcggcaag
gacagcgaagcctacgccgacatcgatgccatcgaaggcatcggcgagaccgtcgtcgat
gcgctggtcgacttcttctccgagccccataacatcgaagcggtcgacgatcttctctcg
catgtgcaagtgacgccgtttgtgcgccagacggtggtcgagtcgcccgtatcgggaaag
acggttgtgtttaccggcaagctcgaacgtatggggcgcagcgaggccaaggctcgggcg
gagcgattgggcgcaaaggtgtcgggctcggtgtcggccaagacagattacctggtggcc
ggagcggatgccggctcgaagctcaaaaacgcccaggcgctcggcgtggccgtgctgacc
gaagacgaatggctggatctcatcggcacgtag
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