Halobacterium noricense: LT974_00165
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Entry
LT974_00165 CDS
T07823
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hno
Halobacterium noricense
Pathway
hno03030
DNA replication
hno03410
Base excision repair
hno03420
Nucleotide excision repair
hno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LT974_00165 (ligA)
03410 Base excision repair
LT974_00165 (ligA)
03420 Nucleotide excision repair
LT974_00165 (ligA)
03430 Mismatch repair
LT974_00165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hno03032
]
LT974_00165 (ligA)
03400 DNA repair and recombination proteins [BR:
hno03400
]
LT974_00165 (ligA)
Enzymes [BR:
hno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LT974_00165 (ligA)
DNA replication proteins [BR:
hno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LT974_00165 (ligA)
DNA repair and recombination proteins [BR:
hno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LT974_00165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LT974_00165 (ligA)
MMR (mismatch excision repair)
DNA ligase
LT974_00165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LT974_00165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
HHH
BRCT
Nlig-Ia
DNA_ligase_ZBD
DUF6333
Motif
Other DBs
NCBI-ProteinID:
UHH25380
LinkDB
All DBs
Position
27242..29482
Genome browser
AA seq
746 aa
AA seq
DB search
MADADVLEDAPEDNPYIRDPDTDFAPVDDIDEDEAEEQVELLREAVRYHDYRYYVENDPV
ISDHAYDRLFDRLQQLEDAFDLQTEDSPTQRVGGEPVEELGTVDHVAPMLSIDSSGEEAD
VRGFAERVEREAGDVRFVCEPKFDGLSVEVVYEEGRYVHAATRGDGETGEDVTENVRTIE
SVPQRLRGDPPEFLAVRGEVYIPREAFQKYNADRVERGEEPFANPRNAAAGTLRQLDPSV
TAERPLDCFFYDVLAARNEPEGSEDSSSGVPAAGESWDAIETGPSRGGLDAGLDTHWKEH
EALPGWGLKVNERTERVDDVDAAIEFRHGLADVREDLNYEIDGVVLKVDDRQACVDLGVT
SRHYRWAYAYKFPPRAEVTEVTDVVVQVGRTGRLTPVALLEPVEVGGVTVSRASLHNQEE
IAELGVDVGDEVRVERAGDVIPYVDEVVESHAEGHFQMPDECPRCGSDVEYDGPIAYCTG
GLACPAQLVRAVGYFAAVLDIEGIGEEAAEQFVEAGLVEADVADLYELTEEDLTELEGWG
EKSARNLLAELDAARHPPLGEFLAAIGIPEVGPTVARDLAEHFETLDALLDVRKSEAPSS
QSESTDSDDVDERDLTDVEGIGEVVAGHVREFLDNERNRRVIERLRDEDCLGEPESPSEA
RGDELEDLTIVFTGSIEGWTRGDLQDLVVRHGGDAPSSVSGNTDYLVVGDDPGERKGEAA
DRHDVPERSPDEFFELLDERGVSVDR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcggacgtgctcgaagacgcgcccgaggacaacccctacatccgagacccc
gacaccgacttcgcgcccgtcgacgacatcgacgaggacgaggccgaggaacaggtggaa
ctgctccgggaggccgtccgctaccacgactaccgctactacgtcgagaacgaccccgtc
atctccgaccacgcctacgaccggctgttcgaccgcctccaacagttagaggacgcgttc
gacctccaaacggaggacagccccacgcaacgcgtcggcggcgaacccgtcgaggagctg
gggaccgtcgaccacgtcgcgccgatgctctccatcgactccagcggcgaggaggccgac
gtccgggggttcgccgagcgcgtcgaacgcgaagccggcgacgtgcgcttcgtctgcgag
ccgaagttcgacgggctctccgtggaagtcgtctacgaggagggccggtacgtgcacgcc
gccacgcgtggcgacggcgagactggcgaggacgtcacggagaacgtccgcaccatcgag
agcgtcccccagcgcctgcgcggcgacccgccggagttcctcgcagtgcgcggcgaggtg
tacatccctcgggaggcgttccagaagtacaacgccgaccgcgtcgaacgcggggaggag
ccgttcgccaacccacgcaacgccgcggcggggacgctacgccaactcgacccgagcgtc
accgccgaacgaccgctcgactgcttcttctacgacgtcctcgcggctcggaacgagccc
gagggctcggaagactcgtcttccggtgtgcccgcggccggcgagtcctgggacgcgata
gagacggggccgtcccgcggcggcctcgacgccggcctcgacacacactggaaagaacac
gaagcactccccggctgggggctgaaggtcaacgagcgcaccgagcgcgtcgacgacgtc
gacgcagccatcgagttccggcacggcctcgcggacgtgcgcgaggacctgaactacgaa
atcgacggcgtcgtcctcaaagtcgacgaccgccaggcgtgcgtggacctcggcgtcacg
tcccgccactaccggtgggcgtacgcgtacaagttcccgccgcgcgcggaagtcacggaa
gtcacggacgtcgtcgtgcaggtcggccggacgggccgcctgacgccggtcgcgctgctc
gaacccgtcgaagtcggcggcgtcaccgtgtcgcgcgcgagcctccacaaccaggaggaa
atcgcggagttgggcgtcgacgtcggcgacgaggtgcgcgtcgagcgcgcgggcgatgtg
attccgtacgtcgacgaggtggtcgaatcgcacgcggagggccacttccagatgcccgac
gagtgcccgcgctgcgggagcgacgtggagtacgacggtcccatcgcgtactgcacgggc
gggctggcgtgtcccgcacagctcgtgcgcgcggtcggctacttcgcggccgtcctcgac
atcgaaggcatcggcgaggaggccgccgagcagttcgtcgaggcgggcctcgtcgaggcg
gacgtcgcggacctctacgaactcacggaagaggacctcacggaactggaggggtggggc
gagaagagcgcgcggaacctgctcgcggagttggacgccgcgcgccacccgccactggga
gaattcctcgcggccatcggcatccccgaagtcggcccgacggtcgcgcgcgacctcgcc
gaacacttcgagacgcttgacgcgctgctggacgttcgaaagagcgaagctccttcgagc
cagtcagaatcgactgattctgacgacgtcgacgagcgcgacctcaccgacgtggagggc
atcggcgaggtggtcgcgggccacgtccgggagttcctcgacaacgagcgcaaccgccgg
gtcatcgagcgcctccgcgacgaggactgcctcggcgagcccgaatccccctcggaagcc
cggggcgacgaactcgaagacctcaccatcgtcttcacggggagcatcgagggctggacg
cgaggcgacctacaggacctcgtcgtgcgacacggcggcgacgcgccctcctccgtctcg
gggaacaccgactacctcgtcgtcggtgacgaccccggcgagcgcaagggcgaggccgcc
gaccgccacgacgtcccggaacgctcgcccgacgagttcttcgagttgctcgacgaacgc
ggcgtgagcgtggaccggtag
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