Vreelandella neptunia: SR894_03205
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Entry
SR894_03205 CDS
T09634
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hnp
Vreelandella neptunia
Pathway
hnp03030
DNA replication
hnp03410
Base excision repair
hnp03420
Nucleotide excision repair
hnp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SR894_03205 (ligA)
03410 Base excision repair
SR894_03205 (ligA)
03420 Nucleotide excision repair
SR894_03205 (ligA)
03430 Mismatch repair
SR894_03205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hnp03032
]
SR894_03205 (ligA)
03400 DNA repair and recombination proteins [BR:
hnp03400
]
SR894_03205 (ligA)
Enzymes [BR:
hnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SR894_03205 (ligA)
DNA replication proteins [BR:
hnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SR894_03205 (ligA)
DNA repair and recombination proteins [BR:
hnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SR894_03205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SR894_03205 (ligA)
MMR (mismatch excision repair)
DNA ligase
SR894_03205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SR894_03205 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WQH13555
LinkDB
All DBs
Position
674640..676661
Genome browser
AA seq
673 aa
AA seq
DB search
MSQPLEEITQLRAALDEANYRYYVLDEPTLTDADYDRKFQRLQQLETENPELVTPDSPTQ
RVGAAPADGFPSVAHAIPMLSLDNAFSRDDIFAFAERVAERLECTADDLEFTCEPKLDGA
AVSLVYEQGMLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGKNVPALLEVRGEVIMRHA
GFEALNERAREEGSKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQAARLEPDLGDTAH
SELMQRLSTLGFRASAELKVVKGPQAVADYCEQLGEKRDGLGFDIDGVVIKVNDLRHQRE
LGFVARAPRWAVAFKYPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSNATLH
NADEIKRLDVMIGDTVSIRRAGDVIPQVVSVHTELRPADARKIIFPEHCPVCGSDIERIE
GEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLDWVESPAALFHLTV
EQLQSLPRMGEKSATNLVNALETAKSTTLARFIYALGIREVGEATAANLANHFGTLDAIQ
AAELEALEAVNDVGPIVAAHVHTFFRQPHNQETIAALIEAGITWQEAEVTQGPTPLEGQT
WVLTGSLESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQMGVEVVDE
ATFIERLAEWEQR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaacctctggaagagattacccaactgcgggccgccctggacgaggccaactac
cgttactacgtgctggatgaaccgacgctgacggatgccgactacgatcgcaagtttcag
cgcttacagcagttggagactgagaacccggagttggtcactcccgattctcccacccag
cgtgtgggcgctgcccccgcggatggctttccgtcggtggcccacgctatccccatgctg
tcgctggataacgcctttagccgtgacgatatcttcgcttttgctgaacgggtggccgaa
cgccttgaatgcacggcggacgaccttgagtttacctgcgagcccaagttggacggcgcg
gccgtttcgctggtgtatgaacagggcatgctggtgagcggcgcgactcgcggtgatggc
cgcaccggcgaaggtattacctctaacctgcgcacgctgcgctcggtaccgctcaagctg
atgggtaaaaacgtgcccgcgctgttagaggtgcggggcgaggtcataatgcgccatgcg
ggctttgaagcgctgaacgagcgcgcccgggaagagggcagcaaggtctttgccaatccg
cgcaacgcggcggcaggcagcctgcgccagttggatccacgcatcacggcaaaacgcccg
ctagagtttcacgcctatcaggctgcacgcctggagccggatttaggtgatactgcgcac
agcgaattaatgcagcgtttgtccactttaggttttcgcgccagtgcagaattgaaggtg
gtcaaaggcccgcaggcggttgccgattactgtgaacagttgggcgaaaagcgcgacggc
ttaggttttgatatcgacggcgtggtgatcaaggtgaacgacctgcgccaccagcgtgaa
cttggttttgttgcccgcgcgccgcgctgggcggtggcgttcaagtatcctgctcaagaa
gaggtcaccacgcttaacgatgtggagtttcaggtcggccgtaccggagcgattacgccc
gtggcccgcctggaaccggtcaccgtagccggtgtgacggtgtctaacgcgacgctacac
aacgctgatgagatcaaacgtttggatgtcatgatcggcgatacggtgtcaatacgccgg
gccggtgatgtgattccccaagtggtgagcgtgcataccgagctgcgaccagcggatgcc
aggaagatcatttttcccgaacactgcccggtgtgcggttcggatatcgagcgtattgaa
ggcgaagcggtggcgcgctgctctggcggcctttactgcgcggcgcagcgtaaagaagcg
ctcaagcatttcgccagtcgcaaagcgctggatattgacggcttgggcgaaaagctgatc
gtgcagttagtggatttggattgggtggaatccccggcggcgctgtttcacctgacagta
gagcagcttcaaagcctgccgcgtatgggtgagaagtcagccaccaacttggtcaacgcg
ctagaaaccgctaagtcgaccaccttggcgcggtttatttatgcgttaggtattcgtgaa
gtaggcgaggcaacggcggccaatctcgccaaccactttggcacccttgacgccattcaa
gccgcggagttggaagcgctggaagcggtcaacgatgtcggcccgattgtagccgcccat
gtgcacactttctttcgccaaccgcacaaccaggaaaccattgccgccttgattgaggcg
ggcattacctggcaagaggcggaagtcacccaaggccccacgccgctggaaggccagacc
tgggtgcttaccggctcgcttgagagtatgacccgggatgagggcaaggcgcgtttgcag
gcgttgggtgctaaggtggcgggtagtgtatcgaagaagacgacctgtctggtcgcaggc
gaagcggcgggcagtaaacttaccaaagctgaacagatgggcgtggaagttgtggacgaa
gccacctttatcgaacgtttggcagagtgggagcagcgttaa
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