Vreelandella neptunia: SR894_22835
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Entry
SR894_22835 CDS
T09634
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hnp
Vreelandella neptunia
Pathway
hnp03030
DNA replication
hnp03410
Base excision repair
hnp03420
Nucleotide excision repair
hnp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SR894_22835 (ligB)
03410 Base excision repair
SR894_22835 (ligB)
03420 Nucleotide excision repair
SR894_22835 (ligB)
03430 Mismatch repair
SR894_22835 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hnp03032
]
SR894_22835 (ligB)
03400 DNA repair and recombination proteins [BR:
hnp03400
]
SR894_22835 (ligB)
Enzymes [BR:
hnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SR894_22835 (ligB)
DNA replication proteins [BR:
hnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SR894_22835 (ligB)
DNA repair and recombination proteins [BR:
hnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SR894_22835 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SR894_22835 (ligB)
MMR (mismatch excision repair)
DNA ligase
SR894_22835 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SR894_22835 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
HHH_5
HHH_2
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WQH12942
LinkDB
All DBs
Position
4934276..4935952
Genome browser
AA seq
558 aa
AA seq
DB search
MLLSVRTWLLGGLIGLVTFSAQAAQCPDWPEERLSRESQALAEQVHRWDTAYHDEGVALI
DDALYDQAVERLATWQRCLGNVPDHRPLTRVTHSSGTLEHPAAQRGLDKADDDGVRRFTS
RREDLWIQPKVDGVAITLRYADGELVEAVSRGDGERGQDWTARAQQIPAIPNTLPEPVSA
VLQGELYWRLTQHVQSRSPASGARGAVAGAMAQSSPTAATLERIGLFVWGWPDGPTDMES
RLAQLSALGFDTAEYTYPLDDRRDAAYWRDSWFNGPLPFATDGVVIKQAERPGVRRWSSS
PPEWAIAWKYPAQQALAEVRGIEFRVGRTGRVTPLVWLNPVLLEGRRISRVSLSSLERWE
TLDVRPGDQVAISLAGLTIPQLTEVVWHTQERSPLTPPSPQRYHLLSCFELTAGCENQLL
ARLTYLGEQLGMQGIGEGTWQALMDAGVVTHLLGWLNVEPGQLQQAYGIGEATADALLEQ
FQVAQGQPFAAWLSALGAPPGSESVRGNWDELAGYQREEWQAVPGVGPVRAEALVAFFRH
PAIQHMAQQLNEAGVAGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgagtgtacgaacatggctattgggcggccttatcgggcttgtcactttttcc
gcacaggctgcccaatgccctgattggccggaggagcgcctaagccgcgaaagccaggcg
ctggccgagcaggttcaccgctgggacaccgcctaccacgacgaaggcgttgcgctgatc
gatgacgccctttacgaccaagcggttgagcgcctagccacttggcagcgctgcctgggc
aatgtacctgaccatcgcccgcttacgcgcgttacacacagtagcggcacccttgagcac
ccggcggcgcagcgtgggcttgataaagccgatgacgatggcgtcaggcgttttaccagt
cgccgcgaagacctgtggatccagcccaaagtggatggcgtggcgattacgctgcgctat
gccgatggtgaactggtcgaagccgttagccgtggcgacggcgagcggggccaggactgg
acagcccgtgcccaacagatacctgccattcccaatacgctacccgagcctgtttctgca
gtactccaaggcgagctgtattggcggttaacccaacacgtgcagtcacgctcacccgca
tcgggtgcccggggggcggtggcgggagcaatggcgcaatcctcccccacagcggccact
ctcgagcgcattggcctgtttgtctggggctggccggatggcccgactgacatggaaagc
cgcttagcccaactgagtgcgctgggctttgacaccgctgagtatacgtatccgctggat
gatcgccgtgatgccgcctactggcgcgatagctggtttaacgggccgttgccgtttgcc
accgacggggtggtgatcaagcaagctgagcgacccggcgtgcgtcgctggtcatcttcg
ccgcctgaatgggccattgcctggaaatatcccgctcagcaggcgctagcggaagtgcgc
ggcatcgagtttcgcgttgggcgcactgggcgtgtgacgccgctggtatggcttaatccg
gtgctgctggaggggcggcgtattagccgcgtctcgttaagctcactggagcgctgggag
acactggatgtccgtcccggtgaccaagtagcgatttcgctagcgggattaacgattccc
cagttgaccgaggtggtgtggcatacccaagagcgctcgccgctgactcctccgtcaccc
cagcgctaccacctgctgagctgctttgaattaactgctggctgtgaaaaccaattgctg
gcgcggctcacctaccttggcgagcagcttggtatgcaaggtatcggtgaaggtacctgg
caagcgctgatggacgcgggcgtagtcactcatttattgggctggctgaacgttgaacca
ggccagctgcaacaggcctacggcattggggaggccaccgctgatgcgttgctggaacag
tttcaagtcgcccagggccagccgtttgcggcttggctgagtgcgctgggggcgccgccg
ggtagcgagtcggttcgcgggaattgggatgagttagcgggctaccagcgcgaagagtgg
caagccgttcccggcgttggcccggttcgcgctgaggcgctggtagcgttttttcgccac
cccgcgatacagcatatggctcaacagcttaacgaggcgggtgttgccggtttttaa
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