Hymenobacter nivis: DDQ68_03360
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Entry
DDQ68_03360 CDS
T05498
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hnv
Hymenobacter nivis
Pathway
hnv03030
DNA replication
hnv03410
Base excision repair
hnv03420
Nucleotide excision repair
hnv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDQ68_03360
03410 Base excision repair
DDQ68_03360
03420 Nucleotide excision repair
DDQ68_03360
03430 Mismatch repair
DDQ68_03360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hnv03032
]
DDQ68_03360
03400 DNA repair and recombination proteins [BR:
hnv03400
]
DDQ68_03360
Enzymes [BR:
hnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DDQ68_03360
DNA replication proteins [BR:
hnv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DDQ68_03360
DNA repair and recombination proteins [BR:
hnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DDQ68_03360
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDQ68_03360
MMR (mismatch excision repair)
DNA ligase
DDQ68_03360
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DDQ68_03360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
zf-NADH-PPase
zf-ribbon_3
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
AWM31910
UniProt:
A0A2Z3GTA3
LinkDB
All DBs
Position
complement(798620..800707)
Genome browser
AA seq
695 aa
AA seq
DB search
MSDAIQTRMQALTERLHYLNHQYYQRDTSEVSDQEFDQLLAELGAFEAAHPTLALPNSPT
QRVGGTVTKQFATSVHRFPMLSLGNTYSEDDLREFDERVQKGLEGAPYRYVCELKFDGVA
MSLAYQNGELHQGVTRGDGTRGDVVTANVRTIRTLPLHLRPAPGQPADFEVRGEVFLPLP
VFAELNAEREQNGEALLANPRNAASGTLKLQDSAQVAARKLRFFAYSLLTPGRHFTAHSE
ALGALAAYGLPVSDTWRVCASLAEVLEFIHQWEKQRFTLPVATDGIVIKVDDLRQQDQLG
LTAKSPRWAIAYKYPAEAARTQLREVQYNVGRTGAVTPVALLDPVPLAGTVVKRATLHNA
NQIAALDLRLGDTVLVEKGGEIIPKITGVVLAARPAGALPIVYPTVCPACGTPLVRPEGE
AHFRCPNERGCPPQLKARLEHYVSRKALNIDGLGAETMGRLFDLGLVNTPADIYDLPARR
AELVTLERLGEKSIDNLIAGIEASKQVPFPRVLFGLGIRYVGETVAQKLAQHYRDVDALT
AATAEEMAAVPEVGGVIAVAAAAWLQEPQNRELLARLRQAGVQLALTGEAPVPASDRLAG
LTFVLSGVFAEHSRDELQHIIVSNGGKITGSISKKLSYLVAGENMGPAKREKAIGFKVPI
ISEADLMALLPAAGEIEIETEAESPATGAQGELFG
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgctattcagacccgtatgcaggcccttaccgagcgccttcactacctcaac
caccaatattaccagcgtgatacatccgaggtgtcggatcaggaattcgaccagttgctg
gccgagctgggcgccttcgaagccgcgcaccccacgctggcgctgcccaactcgcccacc
cagcgcgtgggcggcaccgtcacgaagcagttcgccacttcggtgcaccgtttccccatg
ctcagcctgggcaacacgtactcggaagacgacctgcgcgagttcgacgaacgggtgcag
aagggtttggaaggggctccgtaccgctacgtgtgcgagctgaagttcgatggcgtagcc
atgagcctggcctaccaaaacggcgagctgcaccagggcgtgacgcgcggcgatggcacc
cgcggcgacgtggtgacggccaacgtgcgcactatccgcacgctgccgctgcacctgcgc
ccggcccccggccagcccgccgacttcgaggtgcgcggcgaagtgttcctgccactaccc
gtgtttgccgagctgaacgctgagcgcgagcagaacggcgaggccctgctggccaacccc
cgcaacgccgccagcggcaccctcaagctccaagattcggcccaggtagcggcccgcaag
ctacggttctttgcctactcgctgctcacgccgggccgccacttcaccgcgcacagcgag
gccttgggggccctggctgcctacggcctgccggtatcggacacgtggcgagtctgcgcg
tcattggctgaggtgctggagtttatccaccagtgggagaagcaacgcttcaccctgccg
gtggctacggacggcatcgttatcaaggtagacgacctgcgccagcaagaccaattgggc
ctcacggccaaaagcccacgctgggccattgcctacaagtacccggccgaggcggcccgc
acccaactgcgtgaggtgcagtacaacgtgggccgcaccggcgccgtgacgcccgtggcc
ctgctggaccccgtgccgctggccggtaccgtcgtcaagcgagccactttgcacaatgcc
aatcagatagcggccctcgacctgcgcctcggcgacacggtgctagtggaaaagggcggc
gaaatcatccccaaaatcacgggcgtggtgctcgccgcccggcccgccggggccctgccc
atcgtgtatcccaccgtgtgcccggcctgcggcacgccgctggtgcggcccgagggcgag
gcccacttccgctgccctaacgagcgcggctgcccgccccagctcaaggcccggctggag
cactacgtgagccgcaaagcactgaacatcgacgggttgggggccgaaacaatgggccgc
ctcttcgacctgggcctggtgaacacgccggccgacatctacgacctgcccgcacgccgc
gccgagctagtgacgctggagcggctgggcgagaagtccatcgacaacctcattgccggc
atcgaggccagcaagcaggtgccgttcccgcgggtgctgttcgggctgggtatccgctac
gtgggtgaaaccgtggcccaaaagctcgcccagcactaccgcgacgtcgatgccctaacc
gccgccacggccgaagaaatggccgctgtgcccgaggtgggcggcgtaattgctgtggcc
gccgccgcctggctgcaagagccccaaaaccgcgaactgctcgcgcgcctgcgccaagcc
ggcgtgcagctggccctcaccggcgaggcccccgtgccggcctccgaccggctggcgggt
ctcacattcgtactctcgggcgtattcgccgagcacagccgcgacgagctgcaacatatc
atcgtctcgaacggcggtaaaattaccggctccatctccaagaagctcagctacttggtg
gcaggcgaaaatatgggccccgccaagcgcgaaaaagccatcggcttcaaagtacccatc
atctccgaagccgacctgatggccctgctgcccgccgctggcgaaattgagattgaaacg
gaagccgagtcgccggcaacaggggcccagggcgaactgtttgggtaa
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