KEGG   Hymenobacter nivis: DDQ68_03360
Entry
DDQ68_03360       CDS       T05498                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hnv  Hymenobacter nivis
Pathway
hnv03030  DNA replication
hnv03410  Base excision repair
hnv03420  Nucleotide excision repair
hnv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hnv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DDQ68_03360
   03410 Base excision repair
    DDQ68_03360
   03420 Nucleotide excision repair
    DDQ68_03360
   03430 Mismatch repair
    DDQ68_03360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hnv03032]
    DDQ68_03360
   03400 DNA repair and recombination proteins [BR:hnv03400]
    DDQ68_03360
Enzymes [BR:hnv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DDQ68_03360
DNA replication proteins [BR:hnv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DDQ68_03360
DNA repair and recombination proteins [BR:hnv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DDQ68_03360
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DDQ68_03360
   MMR (mismatch excision repair)
    DNA ligase
     DDQ68_03360
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DDQ68_03360
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 Auto_anti-p27 zf-NADH-PPase zf-ribbon_3 TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: AWM31910
UniProt: A0A2Z3GTA3
LinkDB
Position
complement(798620..800707)
AA seq 695 aa
MSDAIQTRMQALTERLHYLNHQYYQRDTSEVSDQEFDQLLAELGAFEAAHPTLALPNSPT
QRVGGTVTKQFATSVHRFPMLSLGNTYSEDDLREFDERVQKGLEGAPYRYVCELKFDGVA
MSLAYQNGELHQGVTRGDGTRGDVVTANVRTIRTLPLHLRPAPGQPADFEVRGEVFLPLP
VFAELNAEREQNGEALLANPRNAASGTLKLQDSAQVAARKLRFFAYSLLTPGRHFTAHSE
ALGALAAYGLPVSDTWRVCASLAEVLEFIHQWEKQRFTLPVATDGIVIKVDDLRQQDQLG
LTAKSPRWAIAYKYPAEAARTQLREVQYNVGRTGAVTPVALLDPVPLAGTVVKRATLHNA
NQIAALDLRLGDTVLVEKGGEIIPKITGVVLAARPAGALPIVYPTVCPACGTPLVRPEGE
AHFRCPNERGCPPQLKARLEHYVSRKALNIDGLGAETMGRLFDLGLVNTPADIYDLPARR
AELVTLERLGEKSIDNLIAGIEASKQVPFPRVLFGLGIRYVGETVAQKLAQHYRDVDALT
AATAEEMAAVPEVGGVIAVAAAAWLQEPQNRELLARLRQAGVQLALTGEAPVPASDRLAG
LTFVLSGVFAEHSRDELQHIIVSNGGKITGSISKKLSYLVAGENMGPAKREKAIGFKVPI
ISEADLMALLPAAGEIEIETEAESPATGAQGELFG
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgtccgacgctattcagacccgtatgcaggcccttaccgagcgccttcactacctcaac
caccaatattaccagcgtgatacatccgaggtgtcggatcaggaattcgaccagttgctg
gccgagctgggcgccttcgaagccgcgcaccccacgctggcgctgcccaactcgcccacc
cagcgcgtgggcggcaccgtcacgaagcagttcgccacttcggtgcaccgtttccccatg
ctcagcctgggcaacacgtactcggaagacgacctgcgcgagttcgacgaacgggtgcag
aagggtttggaaggggctccgtaccgctacgtgtgcgagctgaagttcgatggcgtagcc
atgagcctggcctaccaaaacggcgagctgcaccagggcgtgacgcgcggcgatggcacc
cgcggcgacgtggtgacggccaacgtgcgcactatccgcacgctgccgctgcacctgcgc
ccggcccccggccagcccgccgacttcgaggtgcgcggcgaagtgttcctgccactaccc
gtgtttgccgagctgaacgctgagcgcgagcagaacggcgaggccctgctggccaacccc
cgcaacgccgccagcggcaccctcaagctccaagattcggcccaggtagcggcccgcaag
ctacggttctttgcctactcgctgctcacgccgggccgccacttcaccgcgcacagcgag
gccttgggggccctggctgcctacggcctgccggtatcggacacgtggcgagtctgcgcg
tcattggctgaggtgctggagtttatccaccagtgggagaagcaacgcttcaccctgccg
gtggctacggacggcatcgttatcaaggtagacgacctgcgccagcaagaccaattgggc
ctcacggccaaaagcccacgctgggccattgcctacaagtacccggccgaggcggcccgc
acccaactgcgtgaggtgcagtacaacgtgggccgcaccggcgccgtgacgcccgtggcc
ctgctggaccccgtgccgctggccggtaccgtcgtcaagcgagccactttgcacaatgcc
aatcagatagcggccctcgacctgcgcctcggcgacacggtgctagtggaaaagggcggc
gaaatcatccccaaaatcacgggcgtggtgctcgccgcccggcccgccggggccctgccc
atcgtgtatcccaccgtgtgcccggcctgcggcacgccgctggtgcggcccgagggcgag
gcccacttccgctgccctaacgagcgcggctgcccgccccagctcaaggcccggctggag
cactacgtgagccgcaaagcactgaacatcgacgggttgggggccgaaacaatgggccgc
ctcttcgacctgggcctggtgaacacgccggccgacatctacgacctgcccgcacgccgc
gccgagctagtgacgctggagcggctgggcgagaagtccatcgacaacctcattgccggc
atcgaggccagcaagcaggtgccgttcccgcgggtgctgttcgggctgggtatccgctac
gtgggtgaaaccgtggcccaaaagctcgcccagcactaccgcgacgtcgatgccctaacc
gccgccacggccgaagaaatggccgctgtgcccgaggtgggcggcgtaattgctgtggcc
gccgccgcctggctgcaagagccccaaaaccgcgaactgctcgcgcgcctgcgccaagcc
ggcgtgcagctggccctcaccggcgaggcccccgtgccggcctccgaccggctggcgggt
ctcacattcgtactctcgggcgtattcgccgagcacagccgcgacgagctgcaacatatc
atcgtctcgaacggcggtaaaattaccggctccatctccaagaagctcagctacttggtg
gcaggcgaaaatatgggccccgccaagcgcgaaaaagccatcggcttcaaagtacccatc
atctccgaagccgacctgatggccctgctgcccgccgctggcgaaattgagattgaaacg
gaagccgagtcgccggcaacaggggcccagggcgaactgtttgggtaa

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