Halobacillus naozhouensis: P9989_03065
Help
Entry
P9989_03065 CDS
T09043
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hnz
Halobacillus naozhouensis
Pathway
hnz03030
DNA replication
hnz03410
Base excision repair
hnz03420
Nucleotide excision repair
hnz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P9989_03065 (ligA)
03410 Base excision repair
P9989_03065 (ligA)
03420 Nucleotide excision repair
P9989_03065 (ligA)
03430 Mismatch repair
P9989_03065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hnz03032
]
P9989_03065 (ligA)
03400 DNA repair and recombination proteins [BR:
hnz03400
]
P9989_03065 (ligA)
Enzymes [BR:
hnz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P9989_03065 (ligA)
DNA replication proteins [BR:
hnz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P9989_03065 (ligA)
DNA repair and recombination proteins [BR:
hnz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P9989_03065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P9989_03065 (ligA)
MMR (mismatch excision repair)
DNA ligase
P9989_03065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P9989_03065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_3
5_3_exonuc
HHH_8
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WFT75393
UniProt:
A0ABY8IYW3
LinkDB
All DBs
Position
567728..569728
Genome browser
AA seq
666 aa
AA seq
DB search
MNHNEAEEVIKDLRKKLNQYNYEYHTLDNPSVSDYEYDQKMRELLDLEAQFPALVTADSP
SQRVGDEPLEAFQKVRHNVPMLSLGNAFNEQELRDFDRRARQGTGEDVTYVCELKIDGLA
VSLRYEEGVLVRGATRGDGTVGEDITKNLRTIRSIPLRLQQPETIEIRGEAFMPKKSFLA
LNEARENNGDEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWQGETKRSHSERLE
ELKNLGLKTNPEWKKCNDIDEVIDYVHSWVERRPDLDYEIDGIVIKVDRLDQQEALGFTA
KSPRWATAYKFPAEEAVTKLTDIELSVGRTGVVTPTAILDPVKVAGTTVQRASLHNEDLI
REKDIRIGDTVVIKKAGDIIPEVVRVHIDERSGEEEPFHMPEYCPACDSKLVRLEEEVAL
RCINPNCDAQLQEALIHFVSRNAMDIEGLGEKVIIQLFNEQLIDNIADLYRLEKEELLKL
ERMGEKSVENLLNAIEQSKENSLERLLFGLGVRYVGTKAANTLAQEFETMASLVEASEER
LVQVPEIGEKMADSIARYFSKPQVIQLLEELEDIEMNMEYKGPKKNDGPEDSPFKGKTVV
LTGKMEHYTRSEAKNIVQNLGGKVTGSISKNTDLLIAGEDAGSKYTKAEQLGVNIWDEEE
FAKALT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataacgaagcagaagaagtcatcaaagaccttcgcaaaaaacttaaccagtat
aactatgaatatcacacgctggacaaccctagtgtctcggactatgaatatgatcaaaag
atgcgggaactgcttgatttagaggcgcaatttccggctcttgtcacagcggactcacct
tcacagcgtgtgggggacgagcctctggaggcctttcagaaagtgcggcacaatgtcccc
atgctcagtctcggaaatgcctttaatgaacaggagctaagagattttgaccgccgagct
cgtcaaggtactggggaagacgttacgtatgtttgcgaattgaaaattgacggtcttgct
gtttcgttacgctatgaggaaggagtccttgttcgtggggctactcggggcgatggcaca
gtaggagaagatattactaagaatttgcgtaccattcgcagcattccgcttcgattgcaa
cagcctgagaccattgagatacgcggtgaagcgtttatgccgaagaagtcatttctggct
ttaaacgaggcacgtgaaaataatggagatgagccatttgcaaacccgaggaacgcagcc
gcaggttcactaagacaacttgacccgaagattgcggcaaagcgtaatttggatattttc
ttatatggagtcggagagtggcagggtgaaacaaaacgttctcacagtgaacgactggaa
gagttgaaaaatctgggattgaaaacgaacccggaatggaaaaagtgtaacgatattgat
gaagtgatcgactatgttcatagctgggtagagcgccgtcccgatctggattatgaaatc
gatggaattgtcattaaagttgatcgcctggaccagcaggaagcccttggattcacagcc
aaaagtccacgctgggcgactgcctacaaattcccggctgaagaggctgttactaaactt
accgatatcgaattaagtgtcggtcgaaccggcgtcgtcactccaactgctatccttgac
cctgtaaaggttgccggaacgactgttcagcgggcttcgctgcacaatgaagatttaatc
cgtgagaaggatatccgcataggggatactgtagtgattaaaaaagcaggcgatattatt
ccagaagtcgtccgagtgcatatagacgagcgttcgggtgaggaagaaccttttcatatg
ccggagtattgtccagcttgtgatagcaaattggtccggttggaagaagaggtggcgtta
aggtgcattaatcctaactgtgatgcccagctgcaagaggctttaatccattttgtttca
cgaaatgccatggacattgaagggttaggagaaaaagtaattatccagcttttcaacgaa
caattgattgataacattgcggacctttatagattggaaaaagaagagttacttaaactt
gagcgtatgggtgaaaaatctgtcgaaaatttgttgaatgctattgaacaatcaaaagaa
aattctttagagcgtctattattcggtctgggagtccgttatgtcgggactaaagcagcc
aacacgcttgcgcaggaatttgaaacaatggcgagccttgtggaagcgagtgaagaaaga
ttggttcaagttcctgaaatcggtgaaaaaatggccgactctattgcacgttatttttcc
aaacctcaggtcatccagttgttggaggaattggaggatattgaaatgaacatggaatac
aagggaccgaagaaaaacgacgggccggaagactctcctttcaaaggaaagacagtcgta
cttacaggaaagatggaacactatacgcggtctgaagccaagaatatcgttcaaaatctt
ggggggaaagtaactgggagcatcagtaaaaatactgatctgttaattgccggagaagat
gctggttcaaagtacacaaaagctgaacagcttggtgttaatatttgggatgaagaagaa
tttgcgaaagctttaacataa
DBGET
integrated database retrieval system
