Hemiscyllium ocellatum (epaulette shark): 132814847
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Entry
132814847 CDS
T09720
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hoc03036
]
132814847 (smchd1)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132814847 (smchd1)
Chromosome and associated proteins [BR:
hoc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
132814847 (smchd1)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
132814847 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Tiam_CC_Ex
Motif
Other DBs
NCBI-GeneID:
132814847
NCBI-ProteinID:
XP_060679586
LinkDB
All DBs
Position
4:89773291..89897665
Genome browser
AA seq
2040 aa
AA seq
DB search
MAAEQKRLPPVVTPDSTAGASVSVGAEKDSNKKVVFVFDRRLGDSLEKCLDLSSWNTFAE
FKSAVCRAFDITAGNNFVITTTNRKEIKSQNFEKSVKDGITLYILNSVDQILPSATRERI
DFLPHYDTLVKSGMYEYYASEGQTPLPFAFAELIDNSLSATANNKGIRNIQVRLLFDESQ
GKSAVAVIDNGRGMTSKQLNNWAVYRLSKFTRTDDDIESDHSGYVRPPMVPRSLNSDISY
FGVGGKQAVFFIGQSTRMITKPAESQDVHELMLSKDDFEKKEKNKEAIYSGFIRNRKATD
SMHITSEDERFLHSLIVEEKDKESFTAVIITGVQQAHVQYLKNYFHLWTRQLAHIYHYYI
HGPKGNDMTATKEVGPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLFINTAADCFEFK
AHVEGEGVVEGVIRYHPFLYDKETYPEDVSCTFNTVEDDEEDCYSVDKGARGKRPIFECF
WNGRLIPYTTVEDFEFCAPPKKRGLVALECYNRISGVLFTNDKFQVSTNKLTFMDLELKL
KDKNTLFTRVVNGQEQRMKIDREFAMWLKECHEKYDKQIKFSCYKGTITRSDLPSKRMQS
PWALYAGIEWDGKTFKAGDLVKTIKTMPIIYGRIVRFLLYGDHEGDVYSTGGEVQVAVEP
QALYDEVKTIPISKLDRTVAVSVIKKYIEDEMARLPDKLSVTWPEGDALTANESRQAGMP
IGALRIEILNKKGETMQKLPGTSHGGSKKLLVELKVIWHSSGGDKEIVSHISQHGGKWPY
WFKKMENINKLGSYTLKLQVVLNESNADTYAGRSLPSRIFKFTVTEGKPYKFTVGLLDPP
FRIAVPFNIPLDLQDEFGHSTQPTSVIKPIVEASVPCSGLDLHYEAFVAKGTSFIIKGVT
ARGSVTTCQGKNFTLKVILPGLKEDSQTLKIRLLPGPPRELSIKPDSNKVVIENGTTFPF
QAEVLDEAGNITAQPKLVVHCKFLGAPNLPVYTVDCSNTGTGILTGPVIHVQNIKKDQTL
KARIEISSCKDVPAVEKIIKLLPSTQVTKLQIFSIDGQKAIPIKHQDEIDWIAGDVIHHL
IFRMYDEGDRQIVVNSSLAEKIKVNWTPRVNREHLIQGLLPDVKVPCSIKDVRYCQVSYQ
DDHISLESAFTVKPQPDEPRLLKCSLKGLSTVQMGEELQGEIHATLSDRHGNQIQTLTSS
CVDLLGVAGEGLDKSKLKVTWQENTQNMVVRGIKFVPGATGQKELCFAWRDFVDYVRIHL
TAGPPTQISILEWGNSEESLSVVNGKTIDKPLVVQLCDAWGNPSPEPMIKVVLLKESGLK
LSPTPQLQKTDENGRASFGVFQIFAARGEYTIQAKAVVNKSAVDGPVIKLNVVPDPDKPV
SLHVDYNKNAAFVAGGFLTEFAVSVVSEDGSAMKNIKPADLTMRMWRGQRPSSNPTILNC
NKARDGDKEGYFYFRDKMLPERTGVHSLQFVYSQDKTVLCGEQITFHVVPGEPVKLMPEE
QPATPTVSNVRAVTHRTLVKNLCLKVMDEYNNPTGEDICGKLVATIRSATEDESEIPQFQ
GKLSSLAFDLNQGSSVISNLVLAENCPGRDSTEYMLIFEPTISKPVKRNPLPPYILSFMF
YNDFKKQQQMTTLTKEKDQLSLSIIAYRSLFDTTNQLISEMKCQAHEATAKEAHLRNELQ
KQKINIAEVSTTQGIDTVLKQMKLERERILKLPRRTCSLSNYTRNSADVLGKIAHLAMIE
DDEVARVISWHMASDMDCVVTLTTDAARRIFDESQGRQQVLPLDSIYRKNLPDAKRPLPH
MRNGKCHFKPEGNPIFARELLIFSENVEQCHTVFGMLLGDTIILDDLNAANQYRKEVVKI
THCPTLLTRDGDRIRSNGKFGGLQNKAPQIDKLRGLVFGAPLPKAYHTLNSQIDLIQQYR
SALIKLNNVNQELDLQLKYLGSPEMTLKHKELNEQENQLKQIEQQLGMTPTRATSDSSPK
ALVLDLSDGQAPSKKMRRESAKKTYSTEEWVSIPLKKSQQPPSGSGMDTNGSTLSRKRKA
NT seq
6123 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgagcagaagcggctcccgccggtcgtcacccccgactccacagccggcgcc
agcgttagcgtcggcgccgagaaggacagcaacaaaaaggtggtttttgtcttcgaccgc
cgcctcggagactcgctggagaaatgtctggacctcagtagctggaacacgtttgccgag
ttcaagagcgccgtgtgtcgggcttttgatattactgcaggaaataattttgtgattaca
acgacaaataggaaagaaattaaaagtcaaaactttgagaaaagtgtcaaagatggcatc
accttatatatacttaactcagtcgaccaaatactgccctcagccacaagggagcgaatt
gactttcttcctcactatgatacgttggttaaaagtggaatgtatgaatactacgccagt
gaaggacagactccattaccatttgccttcgctgaattgatagataattccttatctgca
acagccaataacaaaggaattcgtaatatacaggtccgactgttgtttgatgaatcacaa
ggtaaatcagcagttgctgtaattgacaatgggaggggaatgacatctaagcagcttaat
aactgggcggtctatcgactttccaagttcaccagaacagatgatgacattgaaagcgat
cattcaggatatgtccgcccacccatggtgcctcgcagtctcaatagtgacatttcttat
tttggtgttggtgggaagcaagcagttttcttcattggccaatcaactaggatgataacc
aaaccggctgaatctcaagatgtacacgaattaatgctttctaaagatgattttgaaaag
aaggagaaaaataaagaagcaatatatagtggattcatccgaaatagaaaggcaactgat
tcaatgcacatcaccagtgaagatgaacgattcttgcatagtctcattgtggaagaaaaa
gacaaggaaagttttactgcagtaattatcacaggagttcaacaggcccatgtgcagtat
ctgaaaaactacttccacctctggactagacagttggcccacatataccactactacatt
catggacctaaaggaaatgatatgacagctactaaagaagtaggaccctttaacaacatt
gatatagaaatctcaatgtttgagaagggaaaagtcccaaagatcgtgaatttaagggaa
ataaaagatgacatgcagactctcttcatcaacacagctgcagactgctttgaatttaaa
gcacacgtagaaggagaaggtgttgttgaaggagtaatacgctatcatccattcctctat
gacaaagaaacctatcctgaagatgttagctgtacattcaatactgttgaggatgatgag
gaagactgttattctgttgataaaggagccagaggcaaaagaccaatatttgaatgcttt
tggaatggaagactgattccctacaccacagtggaagattttgagttttgtgcacccccc
aagaaaagaggactcgtggctctggaatgttacaacaggatctcgggggtgctttttacc
aatgataagtttcaggtcagcaccaacaagttgacatttatggatttagaactgaagttg
aaggataagaacacacttttcacacgtgttgtgaatggccaggagcaaagaatgaagata
gacagagaatttgcaatgtggcttaaagaatgccatgagaaatatgacaagcaaataaag
ttcagctgttataaaggcacaatcacaaggagtgatctaccatctaaaagaatgcagagt
ccttgggctttatatgctggtattgaatgggatggcaagaccttcaaagcaggagacttg
gtgaaaactatcaaaacgatgccaataatttatggacgcatagttcgtttcctcctttat
ggtgatcatgaaggtgatgtgtattctactggaggagaagtacaagtagctgtggagccc
caagctttgtatgatgaggtgaagaccattccaatctctaagttggatagaactgtagct
gtttctgtcatcaagaagtatatagaagatgaaatggcaagactccctgataaactgtct
gtaacctggccagaaggagatgcacttactgcaaatgaaagcagacaagcaggaatgcct
ataggtgctttaagaatagaaatcctcaataaaaaaggcgaaactatgcagaaacttcca
ggaacaagtcatggtggatcaaaaaaactgttggttgagctgaaagttatttggcattct
tctggtggtgacaaagaaatagtttctcatatcagtcaacatggtggcaagtggccctat
tggttcaaaaagatggaaaatattaataaacttggaagctacacattaaagctacaagtg
gtattgaatgaaagtaatgcggacacatacgcagggaggtctcttccaagcagaatcttc
aaattcactgttacagagggaaaaccgtataaatttacagttggattgttggatcctcca
tttcgcattgctgtgcctttcaacattcctctagatttgcaagatgaatttgggcattct
acacaaccaacctctgttatcaagccaattgtggaggcaagtgtgccttgcagtgggtta
gacctacattatgaagcctttgtggcaaaaggaacaagtttcatcattaagggtgtaaca
gctcggggctctgtgaccacttgccaaggcaagaacttcactctgaaagtaatcctccct
ggactgaaggaagattcgcaaacattaaaaattagactgttgcctggtccacctcgtgag
ctgagcattaagccagattctaataaagtggttattgaaaatggaaccaccttccctttc
caagctgaagtgctggatgaagcaggaaatattacagcgcagcccaaattggtggtacat
tgcaagtttcttggtgccccaaatttgcctgtgtatacagtggattgtagtaacactggt
acgggaattttaactggccccgtgatacatgtacagaatattaagaaagaccaaacgctg
aaagcaagaattgagatatcaagctgtaaagatgtgccagcagtggagaagataattaaa
ttgctacctagcactcaagttacaaagcttcagatcttcagcatagatgggcaaaaagca
attcctattaaacatcaggatgaaattgactggattgctggagacgtaattcaccatctt
atctttcggatgtatgatgaaggcgatcggcagattgttgttaattcatcactcgcagag
aaaattaaggtcaactggacccctcgggtaaatagagaacacttaattcaaggattgttg
cctgatgttaaagtaccatgctccattaaggatgtgcgctactgtcaggtctcataccaa
gatgatcacatttcattggaaagtgcatttacagtcaagccacagccagatgaacctaga
cttttgaaatgttcattgaaaggattaagtactgttcagatgggtgaagagctacaagga
gaaatacatgcaacactttctgaccgacatggcaatcagattcaaaccctgacatcatca
tgtgtagacttattgggagtagctggagaaggattggacaaaagtaaactgaaagtgact
tggcaggaaaatactcagaatatggttgttcggggaataaagtttgtacctggagccact
ggtcagaaggaactttgttttgcttggcgtgattttgtggattatgtaagaattcatcta
actgcaggacccccaacccaaattagcatccttgaatggggaaattcagaagagtccctc
tcggttgtcaatggtaagaccattgataagcctttggttgtacagctttgtgatgcttgg
ggaaatccttctcctgagcctatgattaaagtcgttctactaaaagaaagtggcctaaag
ctatctccaaccccacaactgcagaaaacggatgaaaatggaagggcaagttttggtgtg
tttcaaatttttgcagcaaggggagaatatacaatacaagctaaagccgtcgttaataaa
agtgcagttgatggcccggtgatcaaactaaatgtagtaccagaccctgacaaaccagtt
agcttgcatgtagactacaacaaaaatgcagcttttgttgctggtggatttttaacagaa
ttcgcagttagtgttgtttctgaagatggcagtgcaatgaagaatatcaaaccagcagac
ctcaccatgcgaatgtggaggggtcaacgcccatcatccaatccaacaattctaaactgc
aataaagcacgagatggtgacaaagaaggatatttttatttcagggataaaatgcttcca
gagcggacaggagtccattccctccagtttgtgtattcacaggacaagaccgtactctgt
ggtgaacagatcactttccatgtggtaccaggtgaaccagttaaattaatgccagaagag
cagccagccactcctactgtttcaaatgtccgcgctgtgactcatcgtacattggtcaaa
aacttgtgtctaaaagtcatggatgaatataacaatccaactggagaggatatttgtggc
aagttggtggctacgattagaagtgcaactgaagatgagagtgagattcctcagtttcag
ggaaaactcagcagtttggcgtttgatctcaaccaaggatcttctgttatttctaacttg
gtgctggcagaaaactgtcctggtagggatagtactgaatatatgctgatttttgaaccg
actatttcaaaacccgtcaagcggaatcctttacctccatacattttatcatttatgttt
tataatgattttaagaaacagcaacagatgacaactttgacgaaagagaaggatcaactc
tccctatccattattgcatacaggagtttatttgacaccaccaatcaactaatcagtgaa
atgaagtgtcaggcacatgaagctacagcaaaagaagctcacctaagaaatgaacttcaa
aagcaaaagataaatatcgcagaagtttcaactacccaaggcattgatactgttctgaag
cagatgaaactcgaaagagagagaatattaaaactacccagaagaacatgttctctgtct
aattacaccagaaacagtgcagacgttttaggaaagattgcacacttggcaatgatagag
gatgatgaggtggccagggtaatctcttggcatatggctagcgacatggactgcgtggtt
actttaaccactgatgctgctcgccgtatcttcgatgaaagtcaggggcgccaacaagta
ctaccactagattccatatacagaaaaaatcttccagatgctaaaaggcctttacctcac
atgcgaaatggaaaatgtcatttcaagcctgaggggaatccaatatttgcccgggaactg
cttattttttctgaaaatgtggagcagtgtcacacagtgttcgggatgcttcttggagat
acaattattctagatgacttaaatgctgccaatcagtatagaaaagaggttgtgaaaatc
acccattgccctaccttgctgaccagagatggggacagaattcgaagcaatggcaagttt
ggaggccttcaaaacaaagctccacaaattgataaacttcgaggactggtgtttggagct
cctctaccaaaagcttatcatacactgaattctcaaattgatcttatccagcaatatcgg
tctgctctgatcaagcttaataacgtcaatcaggaactggatctgcagctgaaatatctt
ggttctccagaaatgaccctgaagcacaaagagcttaatgaacaagagaaccaactcaag
caaatagagcaacagctaggtatgactccaacaagagcaacttctgacagcagtcccaaa
gcattggtgttagatttatctgatggacaggctccaagcaaaaaaatgagaagagagagt
gcgaagaaaacatatagtacagaagagtgggtttcaatacctttgaaaaaatcacagcag
ccaccttcaggatctggaatggacacaaatggaagtactttgtcacggaaaagaaaggct
tag
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integrated database retrieval system
