Hemiscyllium ocellatum (epaulette shark): 132816358
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Entry
132816358 CDS
T09720
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132816358 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132816358 (lig4)
Enzymes [BR:
hoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132816358 (lig4)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132816358 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
C8-3_MUC4
Motif
Other DBs
NCBI-GeneID:
132816358
NCBI-ProteinID:
XP_060681800
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All DBs
Position
6:complement(11828502..11836283)
Genome browser
AA seq
945 aa
AA seq
DB search
MRLRGARLTPGSRRGGDFLPETVTSVHYYPEYNMSAASASNNSLIKTVASKVPFSDLCST
LEKIQKSRSRPDKNKYFKDFLDSWRNFHNTLHKNDLNTTDSFYPALRLILPQLERERMAY
GIKETMLAKLYIDVLGLPKDGKDALKLLNYRAPTSSHGEAGDFAVIAYFVLKQRCPNKGT
LFVQDVNEHLDSIALNNAAKKKDLIKKSLLQLICQSSALEQKWLIRMILKDMKLGISQQT
IFQLFHPDAAELHSVTTDLEKVCKQLHDPTVSLSDVSIMMFSPFRPMLAAIANIKHIEKL
MHNQSFYLETKLDGERIQLHKDGDVYKYFSRNGYDYTQQFGASPLQGSLTPFIHNTFKSN
LQNCILDGEMMAYNPITQTFTQKGNKFDIKRMVEDSELQTCFCVFDVLMVNNQKMANETL
RKRHEILQTLFTSMPGRIQVVEKTEIKSRKDVADALNEAIDKREEGIMVKDPLSVYKPDK
RGEGWSKIKPEYVDGLMDELDILIVGGYFGKGHRGGMVSHFLCAVAEPASPGEKPSVFHS
LCRVGSGYTMKELYDLGQKLAVHWKPYRKRDPPPNILCGTEKPEVYIEPCNSVILQVKAA
EIVSSDMYKTGCTLRFPRIEKIRDDKDWHDCMTLHDLDQLHDKASGKLASRHVDLEDEEL
DKKKRKIPSKSKKLIGIAEQFKAQDLSSVDKVSNIFEDVEFCVLNGLDDHPKAELEKGIA
ECGGLVVQNPGPDTYCVIVGTVNIRVKNLIAANELDVVKADWLVDCLKKKCFIPWQPQFM
IHMSPCTEKHFAQEYDCYGDSYYADVDKSHLREIFKRMSKPEHHLPFKAIADLEQRYLWD
ASPLCMFRHCIVYVDLYTIIGDTSAQVHGTSLDLRVLELRFHGAQCITNLTEGVSHVVVG
CDVRRLSELKLLRMTFERKFKIVLESWVTDSVKAGRVQDEKNYLL
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcgcggagcgcggctgaccccggggtcgaggaggggtggtgattttttacct
gaaacagttacatctgtgcactattaccccgagtacaacatgtctgcagcatctgcatca
aataattcgctaataaagactgtggccagtaaagtgcctttttctgacttgtgttcaaca
ctggaaaaaatccagaagagtaggtccagacctgataaaaataagtatttcaaggacttc
ctggattcatggagaaatttccataacacactccataagaatgacttaaacactactgat
tccttctacccagcactgcgtctaattcttcctcagctcgaaagggagaggatggcatat
ggaataaaagagacaatgcttgccaaactttacattgatgttcttggtcttccaaaagat
ggaaaagatgcacttaagcttctgaactatcgagctccaaccagttcacatggagaggct
ggtgattttgctgtgattgcatattttgttttgaagcagaggtgtcccaataaaggcacg
ctgtttgtgcaggatgtaaatgaacatttggattctattgcactcaataatgcagccaag
aaaaaagatttgatcaaaaagagtctgctgcagttaatctgtcagagttcagccttggaa
caaaagtggcttattcgtatgatcttgaaagatatgaaactgggtatcagtcagcaaact
atattccagttattccatccagatgctgcagagcttcacagtgtaacgacagatctggag
aaagtttgtaaacagcttcatgatccaacagtgtccctcagtgatgtctctatcatgatg
ttctctccttttcggccaatgcttgccgccattgcgaacataaaacacattgaaaagtta
atgcacaatcagagcttctatttggaaactaagctggatggagagcgtatccagcttcac
aaggacggagatgtttacaaatatttctcgcgtaatggatatgattacacccagcagttc
ggtgcttctccattgcaagggtccctcacaccatttattcataataccttcaagagcaat
ttgcagaactgcatacttgatggagaaatgatggcctacaaccccatcacccaaaccttt
acgcagaagggcaacaagtttgacatcaaaagaatggtggaagactcagaattgcaaact
tgtttctgtgtctttgatgtgttaatggtaaataaccagaagatggcaaatgaaaccctc
aggaaaaggcatgaaattcttcaaactctcttcacatcaatgccagggcgcattcaggtt
gtggagaaaactgagataaaatcaagaaaggatgtagctgatgccctaaatgaagcaata
gataaaagagaagaaggaatcatggtgaaagatcctttgtctgtgtataaaccagacaag
cgtggtgaaggctggtcaaaaattaagccggaatatgttgatggcttgatggatgagctt
gatatcttaattgtcggtggttactttggtaaaggacatcgcggtggaatggtatctcac
ttcctatgtgctgtcgcagagcctgcttcacctggtgagaaaccatcagtcttccactcg
ctttgccgtgttggatctgggtacaccatgaaggaattgtacgatcttgggcagaaactg
gctgtacactggaaaccttaccgcaaaagggatcctccaccaaatattctctgtggcaca
gaaaaaccagaggtctacattgagccatgcaattccgttattctacaagttaaagcagct
gagattgtgagcagtgatatgtataaaactggttgcaccttgcgttttccgcgaattgaa
aagatcagagatgataaggattggcatgattgtatgacgttacatgatttggatcaattg
catgataaggcatccgggaaacttgcatcaagacacgttgacctagaagatgaggaactg
gacaagaaaaagcgtaaaattccttcaaagtccaaaaagctgattggcattgcggaacag
tttaaagcccaagatctgtccagtgttgacaaagtttctaatatttttgaagatgttgaa
ttttgtgtcttgaacggtcttgatgaccatcctaaagcagaactagaaaagggaatagct
gaatgtggagggttggtcgtgcagaaccctgggccagacacttattgcgttattgttggc
acagttaatatccgcgtcaaaaaccttattgctgctaatgagcttgatgtggtcaaagcc
gactggttggtggactgtttgaaaaagaagtgttttataccatggcaaccccagtttatg
attcatatgtcaccttgcacagaaaaacattttgcccaggaatatgattgctatggagac
agttattacgctgatgttgataaaagccatctgcgggagatattcaaaagaatgagtaaa
ccagaacaccatttaccctttaaagctattgctgacttggaacagcgttacctttgggat
gcgtcacctctatgtatgttcagacactgcatcgtttatgtagatctttacactataatt
ggtgatactagtgcacaggtacatggcacaagcttagatttgagagttttggagttgcga
tttcacggtgcacaatgcattactaatttgaccgaaggtgtctcacatgtcgttgttggt
tgcgatgtacgacgtctttccgaactaaaattgctcaggatgacatttgaaaggaagttc
aaaattgtactggaatcatgggtaaccgattcagtaaaagcaggaagggtgcaagatgaa
aagaattacctactgtag
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