Hemiscyllium ocellatum (epaulette shark): 132818146
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Entry
132818146 CDS
T09720
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04115
p53 signaling pathway
hoc04145
Phagosome
hoc04148
Efferocytosis
hoc04350
TGF-beta signaling pathway
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
132818146 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132818146 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
132818146 (thbs1b)
04148 Efferocytosis
132818146 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
132818146 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
132818146 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132818146 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hoc04131
]
132818146 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132818146 (thbs1b)
Membrane trafficking [BR:
hoc04131
]
Endocytosis
Phagocytosis
Opsonins
132818146 (thbs1b)
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132818146 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
TSP1_CCN
EGF_3
TSP1_ADAMTS
cEGF
EGF
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
132818146
NCBI-ProteinID:
XP_060684880
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All DBs
Position
8:complement(45586671..45603333)
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AA seq
1168 aa
AA seq
DB search
MKPLQGLFILLMIVACSPKRIQVAGVDGVFDLFDITGLTRKNVGVHMVKGPEASSPAYRI
LNPDLIAPASENSFSELIDHIQQEKGFIFLATLRQMKKSRGTLVAIETLQGTRIFEILSN
GKANTLDLTITIEGKQSMVSITDAHLANARWKNLTLFVQEDVATLYVGCEKVNGVELEAA
IHKVLKPGDYNLRLAKGGPGLRNNFQGVLQNVRFVFGTNLETILMNKGCYNTAPGILPLP
IRGSESPAIRTNFYGHKPKDLQTVCGISCEELSNMFSELQALRTMVTQLVNNVQKVTAEN
ELIAKRIGIKQIGGCFHNGMTYKDKDQWKVDNCTDCTCQSSVTFCQRISCPTVSCADAVV
PDGECCARCPSIPNESEAGWSPWSEWTHCSVTCGIGTQQRGRSCDRINSDCHGTSVQTRS
CHLEECDKRFKQDGGWSYWSPWSSCSVSCGAGVITRIRLCNSPMPQMGGKECEGPKRETE
KCEQVPCPIDGNWGVWSPWNSCSVTCGGGIQKRTRLCDSPAPEYEGKNCVGESRETQLCN
KLECPIDGCLSNPCFAQSKCTSFPDGSWTCGPCPRGYRGDGIHCEDINECSEVPDTCFQV
NGEQRCENTEPGYNCLPCPLRYTGNQPFGRGIEEATKNKQVCEPRNPCKDGTHNCNKHAR
CIYLGIFSDQMFRCECRPGFAGNGIICGEDTDLDGWPNKDLTCVVNATYHCKKDNCPSLP
NSGQEDHDKDGVGDACDNDDDNDGIPDERDNCAFLFNPRQYDYDRDDVGDRCDNCPYDHN
PDQTDTDANGEGDACAIDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNCPLEHNP
EQTDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDNDG
IPDEKDNCRLKANPNQTDSDGDGRGDACKDDFDGDSILDIYDVCPENFEITETDFRKFQM
VPLDPKGTSQIDPNWVVRHKGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFINTERDDDY
AGFVFGYQSSSRFYVVMWKQITQTYWLDTPTRAQGYAGLSIKVVNSTTGPGEHLRNALWH
TGNTEGQVQTLWHDPRNIGWKDRAAYRWQLTHRPKTGFIRVVMYEGRKIMADSGAIYDKT
YAGGRLGLFVFSQEMVYFSDLRYECRDS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactgcaaggactttttatacttttaatgattgttgcttgttcgcccaagcga
atccaagtcgccggagtggatggtgtctttgatctgtttgacatcactggcctgactcgt
aaaaatgtaggggtgcacatggtaaaggggccggaggcgagcagcccggcttacaggatc
ctgaaccctgacctcattgccccggcttcagagaacagcttcagtgagctgatcgaccac
atccagcaggagaagggcttcatcttcctcgccaccctgcgccagatgaagaaaagccgg
ggcaccttggtggccatcgagacgctgcaggggacccgcatcttcgagatcctgtccaac
ggcaaggcgaacaccctcgacctgaccatcaccatcgagggcaaacagagcatggtgtcc
atcaccgatgcccacctggccaatgcccgctggaagaacctcaccctgttcgtgcaggag
gacgtggccacgctctatgtgggctgtgagaaggtcaacggcgtggagctggaggcagcc
attcacaaagtgctgaagcctggtgactacaacctgaggctagccaaaggcgggccgggt
ctccggaacaacttccagggagtactgcagaacgtgcgctttgtttttgggaccaacttg
gaaaccattctgatgaacaagggctgctacaacactgctccaggaattcttcctttacca
atcaggggctctgaaagcccagccatcaggaccaatttttacggtcacaaacccaaagat
cttcagacagtctgtggcatctcctgcgaggaactgtccaacatgttctccgaactgcaa
gctctcaggacgatggtcacccagctggttaataatgtccaaaaagtgactgcagaaaat
gaattgattgccaaaaggattggaatcaaacagataggaggatgtttccacaatggcatg
acctacaaagacaaagatcaatggaaagtggacaactgcacagactgcacttgtcagtca
tcagtcaccttctgtcagaggatttcctgcccgactgtgtcatgtgctgatgctgtagtc
ccagatggggagtgctgtgcccgctgtccatcaattccaaatgaatctgaggctggctgg
tctccctggtctgaatggacacattgttctgtcacctgtggaattggaacccagcagcga
ggccgctcctgcgatcggattaatagtgactgtcatgggacctctgttcagactcgtagc
tgtcatttagaagaatgtgacaagagattcaaacaagatggtggttggagttattggtcc
ccttggtcgtcatgctcagtgagctgtggagctggagtgatcactcgcatccgcctgtgt
aactccccaatgccacaaatgggtggcaaagagtgtgagggaccgaagcgggaaactgag
aagtgtgaacaggtcccgtgcccaattgatgggaactggggtgtttggtcaccatggaac
tcttgttccgtcacctgtggaggaggaattcagaaacgcacacgtctttgtgacagtcca
gcaccggaatatgaaggcaaaaattgtgtgggtgaatcccgggagactcagctatgcaac
aaactggagtgcccaattgatggatgtttatcaaatccatgctttgctcaaagcaagtgt
acgagcttcccagatggctcctggacgtgtggtccctgccctcgtggttacagaggagat
ggtattcattgtgaggacatcaatgagtgctcagaagtgcctgacacctgttttcaagtc
aatggggagcaaaggtgtgaaaacaccgaaccaggttacaattgtctgccctgcccactg
cgatacactggcaatcaaccatttggcagaggcattgaggaggctacaaagaataagcag
gtctgtgagccacgtaacccctgcaaagatggcacacacaattgcaacaagcatgccaga
tgcatttaccttggtatcttcagtgaccagatgttccgttgtgaatgcaggcctggtttt
gctggcaatggcatcatctgtggagaggatactgacttggacggttggccaaataaagat
ctcacctgtgtggtcaatgctacttaccactgtaaaaaggacaattgtccatcactcccc
aattctggacaagaagatcacgataaggatggagttggtgatgcctgtgataatgatgat
gataatgatggcattccagatgagagggacaattgcgcattcttgtttaatcctcgtcaa
tatgactatgatcgggatgatgtcggagatcgctgtgacaactgcccctacgaccataac
cctgaccagacagacactgatgcaaatggagagggagatgcctgtgccattgatattgat
ggagatggcattctgaatgagaaggacaactgcccatatgtgtacaatgttgaccagagg
gatacagatttagatggtgttggtgatcagtgtgataattgtccattagaacataatcca
gaacaaactgactcagactctgaccttgtaggagataaatgtgataataaccaggatatt
gatgaagatggtcaccagaataacctggataactgcccctacatccccaatgctaaccag
gcagatcacgacaaggatggaaagggtgatgcctgtgatcatgatgatgataatgatggt
attcccgatgagaaggacaattgtaggttgaaagccaatcctaaccaaactgattctgat
ggtgatggccgaggtgatgcttgtaaggatgattttgatggagacagtatcctggatatt
tatgatgtttgtcctgaaaacttcgaaatcactgagactgacttccgcaaattccaaatg
gtaccactggatcccaagggaacatcccaaattgaccccaactgggtagtcagacataaa
ggcaaagagttggtacagactgttaattgtgatcctggcattgctgtaggatatgatgaa
ttcaatgctgtggactttagtggtactttcttcataaatactgaacgagatgatgactat
gctggatttgtatttggataccagtccagcagtcgcttctatgtggtaatgtggaagcag
atcacacagacctattggcttgatacaccaaccagagcacagggctatgctggactctcc
atcaaagtggtgaactctacaactgggccaggagagcacttgcgtaatgcactctggcac
actggcaatacagaaggacaggttcaaacattgtggcatgatccacgtaacattggttgg
aaggacagggctgcttacagatggcagttaactcacagacccaagactggattcatcaga
gttgtaatgtatgaggggagaaagatcatggctgactctggggccatctatgacaagact
tatgctggtggacgattgggtctcttcgtcttctctcaagaaatggtttacttttctgat
ctcagatacgagtgtagagattcataa
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